%0 Journal Article %1 Wei2013MultidomainBasic %A WEI, GUO-WEI %D 2013 %J Journal of Theoretical and Computational Chemistry %K mathematics multidomain-modeling multiphysics-modeling multiscale-modeling %N 08 %P 1341006 %R 10.1142/S021963361341006X %T MULTISCALE, MULTIPHYSICS AND MULTIDOMAIN MODELS I: BASIC THEORY %U http://www.worldscientific.com/doi/abs/10.1142/S021963361341006X %V 12 %X <p class="first last">This work extends our earlier two-domain formulation of a differential geometry based multiscale paradigm into a multidomain theory, which endows us the ability to simultaneously accommodate multiphysical descriptions of aqueous chemical, physical and biological systems, such as fuel cells, solar cells, nanofluidics, ion channels, viruses, RNA polymerases, molecular motors, and large macromolecular complexes. The essential idea is to make use of the differential geometry theory of surfaces as a natural means to geometrically separate the macroscopic domain of solvent from the microscopic domain of solute, and dynamically couple continuum and discrete descriptions. Our main strategy is to construct energy functionals to put on an equal footing of multiphysics, including polar (i.e. electrostatic) solvation, non-polar solvation, chemical potential, quantum mechanics, fluid mechanics, molecular mechanics, coarse grained dynamics, and elastic dynamics. The variational principle is applied to the energy functionals to derive desirable governing equations, such as multidomain Laplace–Beltrami (LB) equations for macromolecular morphologies, multidomain Poisson–Boltzmann (PB) equation or Poisson equation for electrostatic potential, generalized Nernst–Planck (NP) equations for the dynamics of charged solvent species, generalized Navier–Stokes (NS) equation for fluid dynamics, generalized Newton's equations for molecular dynamics (MD) or coarse-grained dynamics and equation of motion for elastic dynamics. Unlike the classical PB equation, our PB equation is an integral-differential equation due to solvent–solute interactions. To illustrate the proposed formalism, we have explicitly constructed three models, a multidomain solvation model, a multidomain charge transport model and a multidomain chemo-electro-fluid-MD-elastic model. Each solute domain is equipped with distinct surface tension, pressure, dielectric function, and charge density distribution. In addition to long-range Coulombic interactions, various non-electrostatic solvent–solute interactions are considered in the present modeling. We demonstrate the consistency between the non-equilibrium charge transport model and the equilibrium solvation model by showing the systematical reduction of the former to the latter at equilibrium. This paper also offers a brief review of the field.</p> </div>

@article{Wei2013MultidomainBasic, abstract = { <p class="first last">This work extends our earlier two-domain formulation of a differential geometry based multiscale paradigm into a multidomain theory, which endows us the ability to simultaneously accommodate multiphysical descriptions of aqueous chemical, physical and biological systems, such as fuel cells, solar cells, nanofluidics, ion channels, viruses, RNA polymerases, molecular motors, and large macromolecular complexes. The essential idea is to make use of the differential geometry theory of surfaces as a natural means to geometrically separate the macroscopic domain of solvent from the microscopic domain of solute, and dynamically couple continuum and discrete descriptions. Our main strategy is to construct energy functionals to put on an equal footing of multiphysics, including polar (i.e. electrostatic) solvation, non-polar solvation, chemical potential, quantum mechanics, fluid mechanics, molecular mechanics, coarse grained dynamics, and elastic dynamics. The variational principle is applied to the energy functionals to derive desirable governing equations, such as multidomain Laplace–Beltrami (LB) equations for macromolecular morphologies, multidomain Poisson–Boltzmann (PB) equation or Poisson equation for electrostatic potential, generalized Nernst–Planck (NP) equations for the dynamics of charged solvent species, generalized Navier–Stokes (NS) equation for fluid dynamics, generalized Newton's equations for molecular dynamics (MD) or coarse-grained dynamics and equation of motion for elastic dynamics. Unlike the classical PB equation, our PB equation is an integral-differential equation due to solvent–solute interactions. To illustrate the proposed formalism, we have explicitly constructed three models, a multidomain solvation model, a multidomain charge transport model and a multidomain chemo-electro-fluid-MD-elastic model. Each solute domain is equipped with distinct surface tension, pressure, dielectric function, and charge density distribution. In addition to long-range Coulombic interactions, various non-electrostatic solvent–solute interactions are considered in the present modeling. We demonstrate the consistency between the non-equilibrium charge transport model and the equilibrium solvation model by showing the systematical reduction of the former to the latter at equilibrium. This paper also offers a brief review of the field.</p> </div>}, added-at = {2016-10-10T17:52:32.000+0200}, author = {WEI, GUO-WEI}, biburl = {https://www.bibsonomy.org/bibtex/2b957ef80e38802a9508f45a1d898b4ac/salotz}, description = {MULTISCALE, MULTIPHYSICS AND MULTIDOMAIN MODELS I: BASIC THEORY | Journal of Theoretical and Computational Chemistry , Vol 12, No 08 | World Scientific}, doi = {10.1142/S021963361341006X}, eprint = {http://www.worldscientific.com/doi/pdf/10.1142/S021963361341006X}, interhash = {0764e6961faf14a5ae1522386c92a327}, intrahash = {b957ef80e38802a9508f45a1d898b4ac}, journal = {Journal of Theoretical and Computational Chemistry}, keywords = {mathematics multidomain-modeling multiphysics-modeling multiscale-modeling}, number = 08, pages = 1341006, timestamp = {2016-10-10T17:52:32.000+0200}, title = {MULTISCALE, MULTIPHYSICS AND MULTIDOMAIN MODELS I: BASIC THEORY}, url = {http://www.worldscientific.com/doi/abs/10.1142/S021963361341006X}, volume = 12, year = 2013 }