becker > paper:fastcor

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1nonparametric - Effect size interpretation for Cliff's delta similar to Cohen's "small, medium and large effect" - Cross Validated
https://stats.stackexchange.com/questions/240688/effect-size-interpretation-for-cliffs-delta-similar-to-cohens-small-medium-a/533848#533848
3 years ago by @becker
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effectsizecohencliffscohenscliffdeltadthresholdsinterpretationstrengthpaper:fastcornonparametricnonparametric
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1Make a difference: the alternative for p-values - the Node
https://thenode.biologists.com/quantification-of-differences-as-alternative-for-p-values/research/
3 years ago by @becker
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effect
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paper:fastcor
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1Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer | SpringerLink
https://link.springer.com/article/10.1186/s13059-019-1851-8
3 years ago by @becker
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differential
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dgca
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1ryananeff/DGCA: DGCA 2.0: Highly Parallel and Memory-efficient Differential Correlation analysis
https://github.com/ryananeff/DGCA
3 years ago by @becker
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1sorting - Parallel in-place sort for numpy arrays - Stack Overflow
https://stackoverflow.com/questions/27551363/parallel-in-place-sort-for-numpy-arrays
3 years ago by @becker
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publications (hide)108
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1Data-driven longitudinal characterization of neonatal health and morbidity
D. Francesco, J. Reiss, J. Roger, A. Tang, A. Chang, M. Becker, T. Phongpreecha, C. Espinosa, S. Morin, E. Berson and 23 other author(s). Science Translational Medicine, 15 (683): eadc9854 (2023)
a year ago by @becker
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data
health
longitudinal
myown
neonatal
paper:fastcor
project:2023-tracking
datahealthlongitudinalmyownneonatalpaper:fastcorproject:2023-tracking
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1Analysis of the time complexity of quick sort algorithm
W. Xiang. 2011 international conference on information management, innovation management and industrial engineering, 1, page 408--410. IEEE, (2011)
2 years ago by @becker
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paper:fastcor
quicksort
complexity
time
algorithm
sort
sorting
citedby:scholar:count:31
citedby:scholar:timestamp:2022-9-23
paper:fastcorquicksortcomplexitytimealgorithmsortsortingcitedby:scholar:count:31citedby:scholar:timestamp:2022-9-23
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2Experimental evaluation of selected tree structures for exact and approximate k-nearest neighbor classification
A. Cislak, and S. Grabowski. 2014 Federated Conference on Computer Science and Information Systems, page 93--100. IEEE, (2014)
2 years ago by @becker
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paper:fastcor
ball
tree
balltree
complexity
k
nearest
neighbor
neighbors
citedby:scholar:count:7
citedby:scholar:timestamp:2022-9-23
paper:fastcorballtreeballtreecomplexityknearestneighborneighborscitedby:scholar:count:7citedby:scholar:timestamp:2022-9-23
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6The max-min hill-climbing Bayesian network structure learning algorithm
I. Tsamardinos, L. Brown, and C. Aliferis. Machine learning, 65 (1): 31--78 (2006)
2 years ago by @becker
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paper:fastcor
partial
correlation
causation
bayesian
bayes
network
citedby:scholar:count:1912
citedby:scholar:timestamp:2022-9-23
paper:fastcorpartialcorrelationcausationbayesianbayesnetworkcitedby:scholar:count:1912citedby:scholar:timestamp:2022-9-23
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1Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models
E. Saccenti, M. Hendriks, and A. Smilde. Scientific reports, 10 (1): 1--19 (2020)
2 years ago by @becker
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paper:fastcor
correlation
error
data
bias
estimation
correction
citedby:scholar:count:53
citedby:scholar:timestamp:2022-9-23
paper:fastcorcorrelationerrordatabiasestimationcorrectioncitedby:scholar:count:53citedby:scholar:timestamp:2022-9-23
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1DiffCorr: an R package to analyze and visualize differential correlations in biological networks
A. Fukushima. Gene, 518 (1): 209--214 (2013)
2 years ago by @becker
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paper:fastcor
differential
correlation
analysis
citedby:scholar:count:142
citedby:scholar:timestamp:2022-9-18
paper:fastcordifferentialcorrelationanalysiscitedby:scholar:count:142citedby:scholar:timestamp:2022-9-18
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2The discordant method: a novel approach for differential correlation
C. Siska, R. Bowler, and K. Kechris. Bioinformatics, 32 (5): 690--696 (2016)
2 years ago by @becker
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paper:fastcor
differential
correlation
analysis
citedby:scholar:count:28
citedby:scholar:timestamp:2022-9-18
paper:fastcordifferentialcorrelationanalysiscitedby:scholar:count:28citedby:scholar:timestamp:2022-9-18
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2DCARS: differential correlation across ranked samples
S. Ghazanfar, D. Strbenac, J. Ormerod, J. Yang, and E. Patrick. Bioinformatics, 35 (5): 823--829 (2019)
2 years ago by @becker
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paper:fastcor
differential
correlation
analysis
citedby:scholar:count:5
citedby:scholar:timestamp:2022-9-18
paper:fastcordifferentialcorrelationanalysiscitedby:scholar:count:5citedby:scholar:timestamp:2022-9-18
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3Spark: Cluster computing with working sets
M. Zaharia, M. Chowdhury, M. Franklin, S. Shenker, and I. Stoica. 2nd USENIX Workshop on Hot Topics in Cloud Computing (HotCloud 10), (2010)
2 years ago by @becker
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paper:fastcor
spark
distributed
computing
framework
citedby:scholar:count:6716
citedby:scholar:timestamp:2022-9-17
paper:fastcorsparkdistributedcomputingframeworkcitedby:scholar:count:6716citedby:scholar:timestamp:2022-9-17
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1Selective inference in complex research
Y. Benjamini, R. Heller, and D. Yekutieli. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 367 (1906): 4255--4271 (2009)
2 years ago by @becker
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benjamini
correction
discovery
false
hochberg
paper:fastcor
pvalue
pvalues
rate
benjaminicorrectiondiscoveryfalsehochbergpaper:fastcorpvaluepvaluesrate
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2Comparison of the predicted and observed secondary structure of T4 phage lysozyme
B. Matthews. Biochimica et Biophysica Acta (BBA)-Protein Structure, 405 (2): 442--451 (1975)
2 years ago by @becker
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paper:fastcor
phi
coefficient
correlation
binary
citedby:scholar:count:4936
citedby:scholar:timestamp:2022-9-12
paper:fastcorphicoefficientcorrelationbinarycitedby:scholar:count:4936citedby:scholar:timestamp:2022-9-12
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2Reducing bias and error in the correlation coefficient due to nonnormality
A. Bishara, and J. Hittner. Educational and psychological measurement, 75 (5): 785--804 (2015)
2 years ago by @becker
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paper:fastcor
correlation
coefficient
sampling
normality
bias
error
citedby:scholar:count:172
citedby:scholar:timestamp:2022-9-10
paper:fastcorcorrelationcoefficientsamplingnormalitybiaserrorcitedby:scholar:count:172citedby:scholar:timestamp:2022-9-10
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1A tutorial on regularized partial correlation networks.
S. Epskamp, and E. Fried. Psychological methods, 23 (4): 617 (2018)
2 years ago by @becker
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paper:fastcor
partial
correlation
network
networks
citedby:scholar:count:1004
citedby:scholar:timestamp:2022-9-10
paper:fastcorpartialcorrelationnetworknetworkscitedby:scholar:count:1004citedby:scholar:timestamp:2022-9-10
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1Partial correlation coefficients
B. Brown, and S. Hendrix. Encyclopedia of statistics in behavioral science, (2005)
2 years ago by @becker
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paper:fastcor
partial
correlation
coefficient
citedby:scholar:count:23
citedby:scholar:timestamp:2022-9-10
paper:fastcorpartialcorrelationcoefficientcitedby:scholar:count:23citedby:scholar:timestamp:2022-9-10
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2DINGO: differential network analysis in genomics
M. Ha, V. Baladandayuthapani, and K. Do. Bioinformatics, 31 (21): 3413--3420 (2015)
2 years ago by @becker
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paper:fastcor
differential
network
analysis
citedby:scholar:count:106
citedby:scholar:timestamp:2022-4-27
m:
m:id:test2:node
m:id:test2:coordinate:x:177.40279006958008
m:id:test2:coordinate:y:-49.76913261413574
paper:fastcordifferentialnetworkanalysiscitedby:scholar:count:106citedby:scholar:timestamp:2022-4-27m:m:id:test2:nodem:id:test2:coordinate:x:177.40279006958008m:id:test2:coordinate:y:-49.76913261413574
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2Differential network analysis by simultaneously considering changes in gene interactions and gene expression
J. Tu, L. Ou-Yang, Y. Zhu, H. Yan, H. Qin, and X. Zhang. Bioinformatics, 37 (23): 4414--4423 (2021)
2 years ago by @becker
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paper:fastcor
differential
network
analysis
citedby:scholar:count:3
citedby:scholar:timestamp:2022-4-27
paper:fastcordifferentialnetworkanalysiscitedby:scholar:count:3citedby:scholar:timestamp:2022-4-27
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1BioNetStat: a tool for biological networks differential analysis
V. Jardim, S. Santos, A. Fujita, and M. Buckeridge. Frontiers in genetics, (2019)
2 years ago by @becker
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paper:fastcor
differential
network
analysis
citedby:scholar:count:13
citedby:scholar:timestamp:2022-4-27
paper:fastcordifferentialnetworkanalysiscitedby:scholar:count:13citedby:scholar:timestamp:2022-4-27
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4A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
J. Schäfer, and K. Strimmer. Statistical applications in genetics and molecular biology, (2005)
2 years ago by @becker
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paper:fastcor
regularization
correlation
citedby:scholar:count:1699
citedby:scholar:timestamp:2022-4-27
paper:fastcorregularizationcorrelationcitedby:scholar:count:1699citedby:scholar:timestamp:2022-4-27
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5Machine Learning in Python: Main developments and technology trends in data science, machine learning, and artificial intelligence
S. Raschka, J. Patterson, and C. Nolet. Information, 11 (4): 193 (2020)
2 years ago by @becker
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ai
artifical
data
gpu
intelligence
learning
library
machine
paper:fastcor
py
python
rapids
science
aiartificaldatagpuintelligencelearninglibrarymachinepaper:fastcorpypythonrapidsscience
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1RAPIDS: Collection of Libraries for End to End GPU Data Science
R. Team. (2018)
2 years ago by @becker
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data
gpu
library
paper:fastcor
py
python
rapids
science
datagpulibrarypaper:fastcorpypythonrapidsscience
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1nonparametric - Effect size interpretation for Cliff's delta similar to Cohen's "small, medium and large effect" - Cross Validated

1Make a difference: the alternative for p-values - the Node

1Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer | SpringerLink

1ryananeff/DGCA: DGCA 2.0: Highly Parallel and Memory-efficient Differential Correlation analysis

1sorting - Parallel in-place sort for numpy arrays - Stack Overflow

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1Data-driven longitudinal characterization of neonatal health and morbidity

1Analysis of the time complexity of quick sort algorithm

2Experimental evaluation of selected tree structures for exact and approximate k-nearest neighbor classification

6The max-min hill-climbing Bayesian network structure learning algorithm

1Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models

1DiffCorr: an R package to analyze and visualize differential correlations in biological networks

2The discordant method: a novel approach for differential correlation

2DCARS: differential correlation across ranked samples

3Spark: Cluster computing with working sets

1Selective inference in complex research

2Comparison of the predicted and observed secondary structure of T4 phage lysozyme

2Reducing bias and error in the correlation coefficient due to nonnormality

1A tutorial on regularized partial correlation networks.

1Partial correlation coefficients

2DINGO: differential network analysis in genomics

2Differential network analysis by simultaneously considering changes in gene interactions and gene expression

1BioNetStat: a tool for biological networks differential analysis

4A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics

5Machine Learning in Python: Main developments and technology trends in data science, machine learning, and artificial intelligence

1RAPIDS: Collection of Libraries for End to End GPU Data Science

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