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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan, H. Sofia, C. Hutter, G. Getz, D. Wheeler, L. Ding, S. Caesar-Johnson, J. Demchok, I. Felau, M. Kasapi, M. Ferguson, C. Hutter, H. Sofia, R. Tarnuzzer, Z. Wang, L. Yang, J. Zenklusen, J. Zhang, S. Chudamani, J. Liu, L. Lolla, R. Naresh, T. Pihl, Q. Sun, Y. Wan, Y. Wu, J. Cho, T. DeFreitas, S. Frazer, N. Gehlenborg, G. Getz, D. Heiman, J. Kim, M. Lawrence, P. Lin, S. Meier, M. Noble, G. Saksena, D. Voet, H. Zhang, B. Bernard, N. Chambwe, V. Dhankani, T. Knijnenburg, R. Kramer, K. Leinonen, Y. Liu, M. Miller, S. Reynolds, I. Shmulevich, V. Thorsson, W. Zhang, R. Akbani, B. Broom, A. Hegde, Z. Ju, R. Kanchi, A. Korkut, J. Li, H. Liang, S. Ling, W. Liu, Y. Lu, G. Mills, K. Ng, A. Rao, M. Ryan, J. Wang, J. Weinstein, J. Zhang, A. Abeshouse, J. Armenia, D. Chakravarty, W. Chatila, I. de Bruijn, J. Gao, B. Gross, Z. Heins, R. Kundra, K. La, M. Ladanyi, A. Luna, M. Nissan, A. Ochoa, S. Phillips, E. Reznik, F. Sanchez-Vega, C. Sander, N. Schultz, R. Sheridan, S. Sumer, Y. Sun, B. Taylor, J. Wang, H. Zhang, P. Anur, M. Peto, P. Spellman, C. Benz, J. Stuart, C. Wong, C. Yau, D. Hayes, Parker, M. Wilkerson, A. Ally, M. Balasundaram, R. Bowlby, D. Brooks, R. Carlsen, E. Chuah, N. Dhalla, R. Holt, S. Jones, K. Kasaian, D. Lee, Y. Ma, M. Marra, M. Mayo, R. Moore, A. Mungall, K. Mungall, A. Robertson, S. Sadeghi, J. Schein, P. Sipahimalani, A. Tam, N. Thiessen, K. Tse, T. Wong, A. Berger, R. Beroukhim, A. Cherniack, C. Cibulskis, S. Gabriel, G. Gao, G. Ha, M. Meyerson, S. Schumacher, J. Shih, M. Kucherlapati, R. Kucherlapati, S. Baylin, L. Cope, L. Danilova, M. Bootwalla, P. Lai, D. Maglinte, D. Berg, D. Weisenberger, J. Auman, S. Balu, T. Bodenheimer, C. Fan, K. Hoadley, A. Hoyle, S. Jefferys, C. Jones, S. Meng, P. Mieczkowski, L. Mose, A. Perou, C. Perou, J. Roach, Y. Shi, J. Simons, T. Skelly, M. Soloway, D. Tan, U. Veluvolu, H. Fan, T. Hinoue, P. Laird, H. Shen, W. Zhou, M. Bellair, K. Chang, K. Covington, C. Creighton, H. Dinh, H. Doddapaneni, L. Donehower, J. Drummond, R. Gibbs, R. Glenn, W. Hale, Y. Han, J. Hu, V. Korchina, S. Lee, L. Lewis, W. Li, X. Liu, M. Morgan, D. Morton, D. Muzny, J. Santibanez, M. Sheth, E. Shinbrot, L. Wang, M. Wang, D. Wheeler, L. Xi, F. Zhao, J. Hess, E. Appelbaum, M. Bailey, M. Cordes, L. Ding, C. Fronick, L. Fulton, R. Fulton, C. Kandoth, E. Mardis, M. McLellan, C. Miller, H. Schmidt, R. Wilson, D. Crain, E. Curley, J. Gardner, K. Lau, D. Mallery, S. Morris, J. Paulauskis, R. Penny, C. Shelton, T. Shelton, M. Sherman, E. Thompson, P. Yena, J. Bowen, J. Gastier-Foster, M. Gerken, K. Leraas, T. Lichtenberg, N. Ramirez, L. Wise, E. Zmuda, N. Corcoran, T. Costello, C. Hovens, A. Carvalho, A. de Carvalho, J. Fregnani, A. Longatto-Filho, R. Reis, C. Scapulatempo-Neto, H. Silveira, D. Vidal, A. Burnette, J. Eschbacher, B. Hermes, A. Noss, R. Singh, M. Anderson, P. Castro, M. Ittmann, D. Huntsman, B. Kohl, X. Le, R. Thorp, C. Andry, E. Duffy, V. Lyadov, O. Paklina, G. Setdikova, A. Shabunin, M. Tavobilov, C. McPherson, R. Warnick, R. Berkowitz, D. Cramer, C. Feltmate, N. Horowitz, A. Kibel, M. Muto, C. Raut, A. Malykh, J. Barnholtz-Sloan, W. Barrett, K. Devine, J. Fulop, Q. Ostrom, K. Shimmel, Y. Wolinsky, A. Sloan, A. Rose, F. Giuliante, M. Goodman, B. Karlan, C. Hagedorn, J. Eckman, J. Harr, J. Myers, K. Tucker, L. Zach, B. Deyarmin, H. Hu, L. Kvecher, C. Larson, R. Mural, S. Somiari, A. Vicha, T. Zelinka, J. Bennett, M. Iacocca, B. Rabeno, P. Swanson, M. Latour, L. Lacombe, B. Têtu, A. Bergeron, M. McGraw, S. Staugaitis, J. Chabot, H. Hibshoosh, A. Sepulveda, T. Su, T. Wang, O. Potapova, O. Voronina, L. Desjardins, O. Mariani, S. Roman-Roman, X. Sastre, M. Stern, F. Cheng, S. Signoretti, A. Berchuck, D. Bigner, E. Lipp, J. Marks, S. McCall, R. McLendon, A. Secord, A. Sharp, M. Behera, D. Brat, A. Chen, K. Delman, S. Force, F. Khuri, K. Magliocca, S. Maithel, J. Olson, T. Owonikoko, A. Pickens, S. Ramalingam, D. Shin, G. Sica, E. Meir, H. Zhang, W. Eijckenboom, A. Gillis, E. Korpershoek, L. Looijenga, W. Oosterhuis, H. Stoop, K. van Kessel, E. Zwarthoff, C. Calatozzolo, L. Cuppini, S. Cuzzubbo, F. DiMeco, G. Finocchiaro, L. Mattei, A. Perin, B. Pollo, C. Chen, J. Houck, P. Lohavanichbutr, A. Hartmann, C. Stoehr, R. Stoehr, H. Taubert, S. Wach, B. Wullich, W. Kycler, D. Murawa, M. Wiznerowicz, K. Chung, W. Edenfield, J. Martin, E. Baudin, G. Bubley, R. Bueno, A. Rienzo, W. Richards, S. Kalkanis, T. Mikkelsen, H. Noushmehr, L. Scarpace, N. Girard, M. Aymerich, E. Campo, E. Giné, A. Guillermo, N. Bang, P. Hanh, B. Phu, Y. Tang, H. Colman, K. Evason, P. Dottino, J. Martignetti, H. Gabra, H. Juhl, T. Akeredolu, S. Stepa, D. Hoon, K. Ahn, K. Kang, F. Beuschlein, A. Breggia, M. Birrer, D. Bell, M. Borad, A. Bryce, E. Castle, V. Chandan, J. Cheville, J. Copland, M. Farnell, T. Flotte, N. Giama, T. Ho, M. Kendrick, J. Kocher, K. Kopp, C. Moser, D. Nagorney, D. O'Brien, B. O'Neill, T. Patel, G. Petersen, F. Que, M. Rivera, L. Roberts, R. Smallridge, T. Smyrk, M. Stanton, R. Thompson, M. Torbenson, J. Yang, L. Zhang, F. Brimo, J. Ajani, A. Gonzalez, C. Behrens, J. Bondaruk, R. Broaddus, B. Czerniak, B. Esmaeli, J. Fujimoto, J. Gershenwald, C. Guo, A. Lazar, C. Logothetis, F. Meric-Bernstam, C. Moran, L. Ramondetta, D. Rice, A. Sood, P. Tamboli, T. Thompson, P. Troncoso, A. Tsao, I. Wistuba, C. Carter, L. Haydu, P. Hersey, V. Jakrot, H. Kakavand, R. Kefford, K. Lee, G. Long, G. Mann, M. Quinn, R. Saw, R. Scolyer, K. Shannon, A. Spillane, J. Stretch, M. Synott, J. Thompson, J. Wilmott, H. Al-Ahmadie, T. Chan, R. Ghossein, A. Gopalan, D. Levine, V. Reuter, S. Singer, B. Singh, N. Tien, T. Broudy, C. Mirsaidi, P. Nair, P. Drwiega, J. Miller, J. Smith, H. Zaren, J. Park, N. Hung, E. Kebebew, W. Linehan, A. Metwalli, K. Pacak, P. Pinto, M. Schiffman, L. Schmidt, C. Vocke, N. Wentzensen, R. Worrell, H. Yang, M. Moncrieff, C. Goparaju, J. Melamed, H. Pass, N. Botnariuc, I. Caraman, M. Cernat, I. Chemencedji, A. Clipca, S. Doruc, G. Gorincioi, S. Mura, M. Pirtac, I. Stancul, D. Tcaciuc, M. Albert, I. Alexopoulou, A. Arnaout, J. Bartlett, J. Engel, S. Gilbert, J. Parfitt, H. Sekhon, G. Thomas, D. Rassl, R. Rintoul, C. Bifulco, R. Tamakawa, W. Urba, N. Hayward, H. Timmers, A. Antenucci, F. Facciolo, G. Grazi, M. Marino, R. Merola, R. de Krijger, A. Gimenez-Roqueplo, A. Piché, S. Chevalier, G. McKercher, K. Birsoy, G. Barnett, C. Brewer, C. Farver, T. Naska, N. Pennell, D. Raymond, C. Schilero, K. Smolenski, F. Williams, C. Morrison, J. Borgia, M. Liptay, M. Pool, C. Seder, K. Junker, L. Omberg, M. Dinkin, G. Manikhas, D. Alvaro, M. Bragazzi, V. Cardinale, G. Carpino, E. Gaudio, D. Chesla, S. Cottingham, M. Dubina, F. Moiseenko, R. Dhanasekaran, K. Becker, K. Janssen, J. Slotta-Huspenina, M. Abdel-Rahman, D. Aziz, S. Bell, C. Cebulla, A. Davis, R. Duell, J. Elder, J. Hilty, B. Kumar, J. Lang, N. Lehman, R. Mandt, P. Nguyen, R. Pilarski, K. Rai, L. Schoenfield, K. Senecal, P. Wakely, P. Hansen, R. Lechan, J. Powers, A. Tischler, W. Grizzle, K. Sexton, A. Kastl, J. Henderson, S. Porten, J. Waldmann, M. Fassnacht, S. Asa, D. Schadendorf, M. Couce, M. Graefen, H. Huland, G. Sauter, T. Schlomm, R. Simon, P. Tennstedt, O. Olabode, M. Nelson, O. Bathe, P. Carroll, J. Chan, P. Disaia, P. Glenn, R. Kelley, C. Landen, J. Phillips, M. Prados, J. Simko, K. Smith-McCune, S. VandenBerg, K. Roggin, A. Fehrenbach, A. Kendler, S. Sifri, R. Steele, A. Jimeno, F. Carey, I. Forgie, M. Mannelli, M. Carney, B. Hernandez, B. Campos, C. Herold-Mende, C. Jungk, A. Unterberg, A. von Deimling, A. Bossler, J. Galbraith, L. Jacobus, M. Knudson, T. Knutson, D. Ma, M. Milhem, R. Sigmund, A. Godwin, R. Madan, H. Rosenthal, C. Adebamowo, S. Adebamowo, A. Boussioutas, D. Beer, T. Giordano, A. Mes-Masson, F. Saad, T. Bocklage, L. Landrum, R. Mannel, K. Moore, K. Moxley, R. Postier, J. Walker, R. Zuna, M. Feldman, F. Valdivieso, R. Dhir, J. Luketich, E. Pinero, M. Quintero-Aguilo, C. Carlotti, J. Santos, R. Kemp, A. Sankarankuty, D. Tirapelli, J. Catto, K. Agnew, E. Swisher, J. Creaney, B. Robinson, C. Shelley, E. Godwin, S. Kendall, C. Shipman, C. Bradford, T. Carey, A. Haddad, J. Moyer, L. Peterson, M. Prince, L. Rozek, G. Wolf, R. Bowman, K. Fong, I. Yang, R. Korst, W. Rathmell, J. Fantacone-Campbell, J. Hooke, A. Kovatich, C. Shriver, J. DiPersio, B. Drake, R. Govindan, S. Heath, T. Ley, B. Tine, P. Westervelt, M. Rubin, J. Lee, N. Aredes, and A. Mariamidze. Cell Systems, 6 (3): 271--281.e7 (March 2018)
DOI: 10.1016/j.cels.2018.03.002

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Arvind Batra

Arvind Agarwal

Arvind Dev

Arvind Krishnamurthy

Arvind Krishnaswamy

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Biological pathway inference using manifold embedding.A. Rao, and A. III. ICASSP, page 5992-5995. IEEE, (2011)Peak Geodesic Concentration: A measure of WM complexity in HARDI.A. Rao, A. Smith, R. Schultz, T. Roberts, and R. Verma. MMBIA, page 233-238. IEEE, (2012)Adaptive-model predictive control of electronic expansion valves for evaporator superheat minimization.F. Alsaleem, M. Tesfay, P. Arunasalam, and A. Rao. EIT, page 159-165. IEEE, (2017)Using Directed Information to Build Biologically Relevant Influence Networks.A. Rao, A. III, D. States, and J. Engel. J. Bioinform. Comput. Biol., 6 (3): 493-519 (2008)Efficient Inference of Spatially-Varying Gaussian Markov Random Fields With Applications in Gene Regulatory Networks.V. Ravikumar, T. Xu, W. Al-Holou, S. Fattahi, and A. Rao. IEEE ACM Trans. Comput. Biol. Bioinform., 20 (5): 2920-2932 (September 2023)Multimodal Machine Learning in Image-Based and Clinical Biomedicine: Survey and Prospects.E. Warner, J. Lee, W. Hsu, T. Syeda-Mahmood, C. Kahn, O. Gevaert, and A. Rao. CoRR, (2023)Predicting Osteoarthritis of the Temporomandibular Joint Using Random Forest with Privileged Information.E. Warner, N. Turkestani, J. Bianchi, M. Gurgel, L. Cevidanes, and A. Rao. EPIMI/ML-CDS@MICCAI, volume 13755 of Lecture Notes in Computer Science, page 77-86. Springer, (2022)Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic PipelinesK. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information.A. Rao, A. III, D. States, and J. Engel. EURASIP J. Bioinformatics and Systems Biology, (2007)Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 PatientsA. Kahles, K. Lehmann, N. Toussaint, M. Hüser, S. Stark, T. Sachsenberg, O. Stegle, O. Kohlbacher, C. Sander, S. Caesar-Johnson and 725 other author(s). Cancer Cell, 34 (2): 211--224.e6 (August 2018)

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Disambiguation of "Rao, Arvind"

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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Arvind Batra

Arvind Agarwal

Arvind Dev

Arvind Krishnamurthy

Arvind Krishnaswamy

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Rao, Arvind"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Please choose a person to relate this publication to

Arvind Batra

Arvind Agarwal

Arvind Dev

Arvind Krishnamurthy

Arvind Krishnaswamy

Other publications of authors with the same name

Disambiguation

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community post
history of this post
URL
DOI
BibTeX
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APA
Chicago
DIN 1505
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Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines