%0 Journal Article %1 Blankenberg:2010mm %A Blankenberg, D. %A Gordon, A. %A Von Kuster, G. %A Coraor, N. %A Taylor, J. %A Nekrutenko, A. %A Team, Galaxy %D 2010 %J Bioinformatics %K Analysis, DNA Databases, Factual Genomics Interface Internet Sequence Software User-Computer %N 14 %P 1783-5 %T Manipulation of FASTQ data with Galaxy. %V 26 %X SUMMARY: Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps. Availability and Implementation: This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access: http://usegalaxy.org; download: http://getgalaxy.org). Two short movies that highlight the functionality of tools described in this manuscript as well as results from testing components of this tool suite against a set of previously published files are available at http://usegalaxy.org/u/dan/p/fastq

@article{Blankenberg:2010mm, abstract = {SUMMARY: Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps. Availability and Implementation: This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access: http://usegalaxy.org; download: http://getgalaxy.org). Two short movies that highlight the functionality of tools described in this manuscript as well as results from testing components of this tool suite against a set of previously published files are available at http://usegalaxy.org/u/dan/p/fastq}, added-at = {2012-06-02T05:59:56.000+0200}, author = {Blankenberg, D. and Gordon, A. and Von Kuster, G. and Coraor, N. and Taylor, J. and Nekrutenko, A. and Team, Galaxy}, biburl = {https://www.bibsonomy.org/bibtex/2b053a01020a84ff1cd8cfca25f4dadbd/ozborn}, date-added = {2012-06-01 16:59:33 -0500}, date-modified = {2012-06-01 16:59:49 -0500}, interhash = {0798b0cddb45978f562670228b661b70}, intrahash = {b053a01020a84ff1cd8cfca25f4dadbd}, journal = {Bioinformatics}, keywords = {Analysis, DNA Databases, Factual Genomics Interface Internet Sequence Software User-Computer}, number = 14, pages = {1783-5}, timestamp = {2012-06-03T07:20:31.000+0200}, title = {Manipulation of FASTQ data with Galaxy.}, volume = 26, year = 2010 }