%0 Journal Article %1 barnell2018standard %A Barnell, Erica K. %A Ronning, Peter %A Campbell, Katie M. %A Krysiak, Kilannin %A Ainscough, Benjamin J. %A Sheta, Lana M. %A Pema, Shahil P. %A Schmidt, Alina D. %A Richters, Megan %A Cotto, Kelsy C. %A Danos, Arpad M. %A Ramirez, Cody %A Skidmore, Zachary L. %A Spies, Nicholas C. %A Hundal, Jasreet %A Sediqzad, Malik S. %A Kunisaki, Jason %A Gomez, Felicia %A Trani, Lee %A Matlock, Matthew %A Wagner, Alex H. %A Swamidass, S. Joshua %A Griffith, Malachi %A Griffith, Obi L. %D 2018 %J Genetics in Medicine %K best-practice cancer-research fulltext shouldread snv software %R 10.1038/s41436-018-0278-z %T Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples %U https://doi.org/10.1038/s41436-018-0278-z %X Following automated variant calling, manual review of aligned read sequences is required to identify a high-quality list of somatic variants. Despite widespread use in analyzing sequence data, methods to standardize manual review have not been described, resulting in high inter- and intralab variability.

@article{barnell2018standard, abstract = {Following automated variant calling, manual review of aligned read sequences is required to identify a high-quality list of somatic variants. Despite widespread use in analyzing sequence data, methods to standardize manual review have not been described, resulting in high inter- and intralab variability.}, added-at = {2019-03-20T13:25:37.000+0100}, author = {Barnell, Erica K. and Ronning, Peter and Campbell, Katie M. and Krysiak, Kilannin and Ainscough, Benjamin J. and Sheta, Lana M. and Pema, Shahil P. and Schmidt, Alina D. and Richters, Megan and Cotto, Kelsy C. and Danos, Arpad M. and Ramirez, Cody and Skidmore, Zachary L. and Spies, Nicholas C. and Hundal, Jasreet and Sediqzad, Malik S. and Kunisaki, Jason and Gomez, Felicia and Trani, Lee and Matlock, Matthew and Wagner, Alex H. and Swamidass, S. Joshua and Griffith, Malachi and Griffith, Obi L.}, biburl = {https://www.bibsonomy.org/bibtex/29965e2938612e4311093d588bdecc9dc/marcsaric}, description = {Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples | Genetics in Medicine}, doi = {10.1038/s41436-018-0278-z}, interhash = {9981542b319df7344b5c8b56f19629c9}, intrahash = {9965e2938612e4311093d588bdecc9dc}, issn = {15300366}, journal = {Genetics in Medicine}, keywords = {best-practice cancer-research fulltext shouldread snv software}, refid = {Barnell2018}, timestamp = {2019-03-20T13:25:37.000+0100}, title = {Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples}, url = {https://doi.org/10.1038/s41436-018-0278-z}, year = 2018 }