%0 Journal Article %1 Kreimer2012NetCmpt %A Kreimer, Anat %A Doron-Faigenboim, Adi %A Borenstein, Elhanan %A Freilich, Shiri %D 2012 %I Oxford University Press %J Bioinformatics %K metabolic-networks networks %N 16 %P 2195--2197 %R 10.1093/bioinformatics/bts323 %T NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species %U http://dx.doi.org/10.1093/bioinformatics/bts323 %V 28 %X Summary: NetCmpt is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.

@article{Kreimer2012NetCmpt, abstract = {Summary: {NetCmpt} is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap ({EMO}) between two species, derived from analyzing the topology of the corresponding metabolic models. {NetCmpt} is based on the {EMO} algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions ({EC} numbers) and generates a matrix of the potential competition scores between all pairwise combinations.}, added-at = {2018-12-02T16:09:07.000+0100}, author = {Kreimer, Anat and Doron-Faigenboim, Adi and Borenstein, Elhanan and Freilich, Shiri}, biburl = {https://www.bibsonomy.org/bibtex/2c82d03bd1af21be69546db84309c3289/karthikraman}, citeulike-article-id = {10751309}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/bts323}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/early/2012/06/04/bioinformatics.bts323.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/early/2012/06/04/bioinformatics.bts323.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/22668793}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=22668793}, day = 15, doi = {10.1093/bioinformatics/bts323}, interhash = {fd3f4a1ca46c8383ba17ebef5318662c}, intrahash = {c82d03bd1af21be69546db84309c3289}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {metabolic-networks networks}, month = aug, number = 16, pages = {2195--2197}, pmid = {22668793}, posted-at = {2014-02-03 12:15:31}, priority = {2}, publisher = {Oxford University Press}, timestamp = {2018-12-02T16:09:07.000+0100}, title = {{NetCmpt}: a network-based tool for calculating the metabolic competition between bacterial species}, url = {http://dx.doi.org/10.1093/bioinformatics/bts323}, volume = 28, year = 2012 }