%0 Journal Article %1 langmead2009searching %A Langmead, B. %A Schatz, M.C. %A Lin, J. %A Pop, M. %A Salzberg, S.L. %D 2009 %J Genome Biol %K bioinformatics cloud-computing snp %N 11 %P R134 %R 10.1186/gb-2009-10-11-r134 %T Searching for SNPs with cloud computing %V 10 %X As DNA sequencing outpaces improvements in computer speed, there is a critical need to accelerate tasks like alignment and SNP calling. Crossbow is a cloud-computing software tool that combines the aligner Bowtie and the SNP caller SOAPsnp. Executing in parallel using Hadoop, Crossbow analyzes data comprising 38-fold coverage of the human genome in three hours using a 320-CPU cluster rented from a cloud computing service for about $85. Crossbow is available from http://bowtie-bio.sourceforge.net/crossbow/

@article{langmead2009searching, abstract = {As DNA sequencing outpaces improvements in computer speed, there is a critical need to accelerate tasks like alignment and SNP calling. Crossbow is a cloud-computing software tool that combines the aligner Bowtie and the SNP caller SOAPsnp. Executing in parallel using Hadoop, Crossbow analyzes data comprising 38-fold coverage of the human genome in three hours using a 320-CPU cluster rented from a cloud computing service for about $85. Crossbow is available from http://bowtie-bio.sourceforge.net/crossbow/}, added-at = {2012-04-25T13:37:59.000+0200}, author = {Langmead, B. and Schatz, M.C. and Lin, J. and Pop, M. and Salzberg, S.L.}, biburl = {https://www.bibsonomy.org/bibtex/283be4593a6773cfb459c928e4f55ea84/ytyoun}, doi = {10.1186/gb-2009-10-11-r134}, interhash = {98b734ee3764eeaf032cd1bd419e06c8}, intrahash = {83be4593a6773cfb459c928e4f55ea84}, journal = {Genome Biol}, keywords = {bioinformatics cloud-computing snp}, number = 11, pages = {R134}, timestamp = {2016-06-14T13:29:45.000+0200}, title = {Searching for SNPs with cloud computing}, volume = 10, year = 2009 }