We present an approach for modeling areal spatial covariance in observed genetic allele data by considering the stationary (limiting) distribution of a spatio-temporal Markov random walk model for gene flow. This stationary distribution corresponds to an intrinsic simultaneous autoregressive (SAR) model for spatial correlation, and provides a principled approach to specifying areal spatial models when a spatio-temporal generating process can be assumed. We apply the approach to a study of spatial genetic variation of trout in a stream network in Connecticut, USA.
Description
Discusses asymmetry, with application to trout in a stream network.
Has a mixed model where the driving Gaussian noise has the covariance function
of the stationary distribution of a discrete-space-time random field.
The random field is a discrete model of abundance with sources, sinks, and migration -
reaction-diffusion with diffusion from a MC and reaction equal to births minus deaths;
and modeling the reaction term as spatial white noise.
No reasons are given why the covariance function for space-time abundance should equal
the covariance function underlying allelic identity.
%0 Journal Article
%1 hanks2017modeling
%A Hanks, Ephraim M.
%D 2017
%I Taylor & Francis
%J Journal of the American Statistical Association
%K Matern_covariances coalescing_random_walk diffusion_approximation geographic_methods population_genetics spatial_coalescent
%N 518
%P 497-507
%R 10.1080/01621459.2016.1224714
%T Modeling Spatial Covariance Using the Limiting Distribution of Spatio-Temporal Random Walks
%U https://doi.org/10.1080/01621459.2016.1224714
%V 112
%X We present an approach for modeling areal spatial covariance in observed genetic allele data by considering the stationary (limiting) distribution of a spatio-temporal Markov random walk model for gene flow. This stationary distribution corresponds to an intrinsic simultaneous autoregressive (SAR) model for spatial correlation, and provides a principled approach to specifying areal spatial models when a spatio-temporal generating process can be assumed. We apply the approach to a study of spatial genetic variation of trout in a stream network in Connecticut, USA.
@article{hanks2017modeling,
abstract = {We present an approach for modeling areal spatial covariance in observed genetic allele data by considering the stationary (limiting) distribution of a spatio-temporal Markov random walk model for gene flow. This stationary distribution corresponds to an intrinsic simultaneous autoregressive (SAR) model for spatial correlation, and provides a principled approach to specifying areal spatial models when a spatio-temporal generating process can be assumed. We apply the approach to a study of spatial genetic variation of trout in a stream network in Connecticut, USA. },
added-at = {2017-12-14T23:07:06.000+0100},
author = {Hanks, Ephraim M.},
biburl = {https://www.bibsonomy.org/bibtex/2fb00c778bd3b3e74c2788b5b5322c544/peter.ralph},
description = {Discusses asymmetry, with application to trout in a stream network.
Has a mixed model where the driving Gaussian noise has the covariance function
of the stationary distribution of a discrete-space-time random field.
The random field is a discrete model of abundance with sources, sinks, and migration -
reaction-diffusion with diffusion from a MC and reaction equal to births minus deaths;
and modeling the reaction term as spatial white noise.
No reasons are given why the covariance function for space-time abundance should equal
the covariance function underlying allelic identity.
},
doi = {10.1080/01621459.2016.1224714},
eprint = {https://doi.org/10.1080/01621459.2016.1224714},
interhash = {f88c293638de7849c307be1f5d046eb7},
intrahash = {fb00c778bd3b3e74c2788b5b5322c544},
journal = {Journal of the American Statistical Association},
keywords = {Matern_covariances coalescing_random_walk diffusion_approximation geographic_methods population_genetics spatial_coalescent},
number = 518,
pages = {497-507},
publisher = {Taylor \& Francis},
timestamp = {2018-08-20T07:23:12.000+0200},
title = {Modeling Spatial Covariance Using the Limiting Distribution of Spatio-Temporal Random Walks},
url = {https://doi.org/10.1080/01621459.2016.1224714},
volume = 112,
year = 2017
}