Abstract
Query driven Biclustering Model refers to the
problem of extracting biclusters based on a query gene or
query condition. The extracted biclusters consist of a set of
genes and a subset of conditions that are similar to the query
gene or query condition and it includes the query input also.
Two approaches applied for biclustering problems are top-
down and bottom-up, based on how they tackle the problems.
Top-down techniques 3, 4 start with the entire gene
expression matrix and iteratively partition it into smaller
sub-matrices. On the other hand, bottom-up approach starts
with a randomly chosen set of biclusters that are iteratively
modified, usually enlarged, until no local improvement is
possible. In this paper, the biological significance of biclusters
extracted using two query driven models viz SIMBIC and
SIMBIC+ are compared.This paper is organized as follows.
Section 2 analyzes the popular MSB algorithm and section 3
introduces an improved version of MSB namely SIMBIC model
and the enhanced model of SIMBIC namely SIMBIC+ is
presented in section 4. The experimental analysis and the
biological significance are illustrated in section 5.
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