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1Designability of RNA secondary structures
B. Burghardt, and A. Hartmann. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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random
statphys23
complexity
rna
size
secondary
structures
alphabet
topic-10
algorithmic
structure
randomstatphys23complexityrnasizesecondarystructuresalphabettopic-10algorithmicstructure
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1Global optimization and exact energy landscapes of proteins using a coarse grained model
F. Dressel, and S. Kobe. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
energy
optimization
protein
topic-10
landscape
statphys23energyoptimizationproteintopic-10landscape
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1Local hydrophobicity in protein folding: Theoretical model and experimental test with staphylococcal nuclease and its mutants
M. Wu, C. Hu, H. Chen, and T. Tsong. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
mode
hydrophobicity
staphylococcal
nuclease
folding
empirical
decomposition
model
three-stages
topic-10
local
statphys23modehydrophobicitystaphylococcalnucleasefoldingempiricaldecompositionmodelthree-stagestopic-10local
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1Quantitative Studies of the Effects of Cytoskeletal-Destabilizing Agents and Actin Mutations on the Dynamics of G1-Arrested S. cerevisea Mitochondria
E. Senning, and A. Marcus. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
actin
intracellular
fluctuations
dynamics
cytoskeleton
fluorescence
mitochondria
motility
topic-10
filament
statphys23actinintracellularfluctuationsdynamicscytoskeletonfluorescencemitochondriamotilitytopic-10filament
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1Waves of gene expression in vertebrate segmentation
S. Ares, L. Morelli, L. Herrgen, C. Schroeter, A. Oates, and F. Juelicher. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
developmental
biology
dynamics
pattern
formation
somitogenesis
biophysics
topic-10
nonlinear
statphys23developmentalbiologydynamicspatternformationsomitogenesisbiophysicstopic-10nonlinear
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1Modeling the topological properties of the transcriptional regulatory network of yeast
D. Balcan, A. Kabakcioglu, M. Mungan, and A. Erzan. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
genetic
regulatory
topic-10
networks
topological
properties
statphys23geneticregulatorytopic-10networkstopologicalproperties
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1How does a protein find its site on DNA?
L. Mirny, M. Slutsky, and L. Wunderlich. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
protein-dna
diffusion
protein
jamming
topic-10
disorder
interactions
structure
statphys23protein-dnadiffusionproteinjammingtopic-10disorderinteractionsstructure
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1How to combine amino acid sequences and neural networks to improve protein secondary structure prediction
G. Maino, and F. Fini. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
parallel
neural
folding
protein
prediction
topic-10
network
computation
structure
statphys23parallelneuralfoldingproteinpredictiontopic-10networkcomputationstructure
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1Multiple sequence alignment using the conformational space annealing
K. Joo, J. Lee, I. Kim, S. Lee, and J. Lee. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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global
topic-10
annealing
space
structure
sequence
statphys23
score
optimization
consistency-based
protein
multiple
function
prediction
conformational
alignment
globaltopic-10annealingspacestructuresequencestatphys23scoreoptimizationconsistency-basedproteinmultiplefunctionpredictionconformationalalignment
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1LGCA as mesoscopic models of cell migration in heterogeneous environments
H. Hatzikirou, and A. Deutsch. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
environment
automata
cellular
migration
heterogeneous
topic-10
lattice-gas
cell
statphys23environmentautomatacellularmigrationheterogeneoustopic-10lattice-gascell
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1Optimality and Robustness in Bacterial Growth Control
T. Hwa. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
bacterial
adaptation
invited
growth
model
topic-10
statphys23bacterialadaptationinvitedgrowthmodeltopic-10
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1The analytic expressions of the phase transition lines of the spatial stochastic epidemic model SIRI in the pair approximation scheme
J. Martins, A. Pinto, and N. Stollenwerk. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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phase
approximation
processes
topic-10
pair
transition
epidemiology
statphys23
analytics
stochastic
model
reinfection
lines
phaseapproximationprocessestopic-10pairtransitionepidemiologystatphys23analyticsstochasticmodelreinfectionlines
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1Simplicity in Biology
U. Alon. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
biology
systems
biological
motif
topic-10
network
networks
statphys23biologysystemsbiologicalmotiftopic-10networknetworks
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1Ultrafast Exciton-Exciton Coherent Transfer in Molecular Aggregates
H. Kim, Y. Tanimura, and M. Cho. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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molecular
exciton
echo
topic-10
nonlinear
statphys23
strongly
system
transfer
harvesting
light
spectroscopy
photon
coupled
aggregates
molecularexcitonechotopic-10nonlinearstatphys23stronglysystemtransferharvestinglightspectroscopyphotoncoupledaggregates
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1Dynamics of Cell Orientation
R. De, S. Safran, and A. Zemel. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
gels
cellular
elasticity
active
engineering
tissue
modelling
topic-10
alignment
theory
statphys23gelscellularelasticityactiveengineeringtissuemodellingtopic-10alignmenttheory
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1Population evolution with inheritance of social status
M. Chung, and C. Kim. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
social
non-random
inheritance
evolution
topic-10
mating
population
statphys23socialnon-randominheritanceevolutiontopic-10matingpopulation
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1Critical behavior of polypeptides in short-time Monte Carlo simulations
E. Arashiro, J. Felicio, and U. Hansmann. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
dynamics
critical
short-time
phenomena
topic-10
helix-coil
transition
statphys23dynamicscriticalshort-timephenomenatopic-10helix-coiltransition
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1Robustness and modular design of a biological network
Q. Ouyang. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
embryogenesis
modular
design
drosophila
robustness
biological
topic-10
network
topological
structure
statphys23embryogenesismodulardesigndrosophilarobustnessbiologicaltopic-10networktopologicalstructure
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1Electron localization in double-stranded DNA molecules
A. Krokhin, V. Bagci, F. Izrailev, O. Usatenko, and V. Yampolsky. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
localization
edge
mobility
dna
correlations
topic-10
statphys23localizationedgemobilitydnacorrelationstopic-10
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2Clonal interference in large populations
S. Park, and J. Krug. Abstract Book of the XXIII IUPAP International Conference on Statistical Physics, Genova, Italy, (9-13 July 2007)
18 years ago by @statphys23
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statphys23
reproducing
clonal
fixation
interference
asexually
organisms
index
model
wright-fisher
dispersion
topic-10
statphys23reproducingclonalfixationinterferenceasexuallyorganismsindexmodelwright-fisherdispersiontopic-10
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publications (hide)130
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1Designability of RNA secondary structures

1Global optimization and exact energy landscapes of proteins using a coarse grained model

1Local hydrophobicity in protein folding: Theoretical model and experimental test with staphylococcal nuclease and its mutants

1Quantitative Studies of the Effects of Cytoskeletal-Destabilizing Agents and Actin Mutations on the Dynamics of G1-Arrested S. cerevisea Mitochondria

1Waves of gene expression in vertebrate segmentation

1Modeling the topological properties of the transcriptional regulatory network of yeast

1How does a protein find its site on DNA?

1How to combine amino acid sequences and neural networks to improve protein secondary structure prediction

1Multiple sequence alignment using the conformational space annealing

1LGCA as mesoscopic models of cell migration in heterogeneous environments

1Optimality and Robustness in Bacterial Growth Control

1The analytic expressions of the phase transition lines of the spatial stochastic epidemic model SIRI in the pair approximation scheme

1Simplicity in Biology

1Ultrafast Exciton-Exciton Coherent Transfer in Molecular Aggregates

1Dynamics of Cell Orientation

1Population evolution with inheritance of social status

1Critical behavior of polypeptides in short-time Monte Carlo simulations

1Robustness and modular design of a biological network

1Electron localization in double-stranded DNA molecules

2Clonal interference in large populations

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