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Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection., , , , , , , and . Genetics, 174 (3): 1441--1453 (November 2006)The evolutionary genetics of viral emergence., and . Curr Top Microbiol Immunol, (September 2007)Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data, , , and . Genetics, 161 (3): 1307--1320 (July 2002)Bayesian coalescent inference of past population dynamics from molecular sequences, , , and . Mol Biol Evol, 22 (5): 1185-1192 (May 2005)BEAST: Bayesian evolutionary analysis by sampling trees, and . BMC Evolutionary Biology, (2007)Rates of evolution in ancient DNA from Adelie penguins., , , , , and . Science, 295 (5563): 2270--2273 (2002 Mar 22)Relaxed phylogenetics and dating with confidence, , , and . PLoS Biology, (May 2006)Measurably evolving populations, , , , and . Trends in Ecology and Evolution, (2003)Comparison of relaxed phylogenetics, and . PLos Biology, (2009)To appear.Genealogies from time-stamped sequence data, , , and . chapter 7, page 151-174. Springer, (2003)