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1FluoRender
http://www.sci.utah.edu/cibc-software/fluorender.html
8 years ago by @alex_ruff
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1HD-Tomo: High-Definition Tomography
http://www2.compute.dtu.dk/~pcha/HDtomo/
9 years ago by @alex_ruff
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1Insight Journal (ISSN 2327-770X) - An ITK Implementation of Physics-based Non-rigid Registration Method
http://www.insight-journal.org/browse/publication/876
10 years ago by @alex_ruff
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1Insight Journal (ISSN 2327-770X) - A GPU-based Implementation of Multimodal Deformable Image Registration Based on Mutual Information or Bhattacharyya Distance
http://www.insight-journal.org/browse/publication/803
10 years ago by @alex_ruff
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1Insight Journal (ISSN 2327-770X) - A Flexible Variational Registration Framework
http://www.insight-journal.org/browse/publication/917
10 years ago by @alex_ruff
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1CodaLab - Home
https://www.codalab.org/
10 years ago by @alex_ruff
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1DebrisMaker2 - Procedural geometry creation tool | ScriptSpot
10 years ago by @alex_ruff
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1SVI | HuygensSoftware
http://www.svi.nl/HuygensSoftware
10 years ago by @alex_ruff
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3Drawing Dynamic Visualizations on Vimeo
http://vimeo.com/66085662
10 years ago by @alex_ruff
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3bl.ocks.org - mbostock
http://bl.ocks.org/mbostock
10 years ago by @alex_ruff
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1PatterNodes - Parametric graphic patterns
http://www.lostminds.com/content/product.php?patternodes
10 years ago by @alex_ruff
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1Photosynth - Capture your world in 3D.
https://photosynth.net/default.aspx
10 years ago by @alex_ruff
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1libmv - a structure from motion library - Google Project Hosting
https://code.google.com/p/libmv/
10 years ago by @alex_ruff
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4Eigen
http://eigen.tuxfamily.org/index.php?title=Main_Page
10 years ago by @alex_ruff
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1drishti-2 - volume exploration and presentation tool - Google Project Hosting
https://code.google.com/p/drishti-2/
10 years ago by @alex_ruff
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1Structure Synth
http://structuresynth.sourceforge.net/reference.php
10 years ago by @alex_ruff
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1..cantor.dust..
https://sites.google.com/site/xxcantorxdustxx/home
10 years ago by @alex_ruff
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5MeshLab
http://meshlab.sourceforge.net/
10 years ago by @alex_ruff
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1Paper.js — Features
http://paperjs.org/features/
10 years ago by @alex_ruff
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artcreativeframeworkprogrammingsoftwarevisualizationweb
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1TAAZ Virtual Makeover & Hairstyles - Get a new look with makeup tips to stay in style
http://www.taaz.com/
10 years ago by @alex_ruff
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ComputerVision
face_recognition
illumination
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2Systems engineering and analysis
B. Blanchard, and W. Fabrycky. Prentice Hall, Boston, (2011)
8 years ago by @alex_ruff
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1Systems engineering principles and practice
A. Kossiakoff. (2011)
8 years ago by @alex_ruff
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1OMERO: flexible, model-driven data management for experimental biology
C. Allan, J. Burel, J. Moore, C. Blackburn, M. Linkert, S. Loynton, D. MacDonald, W. Moore, C. Neves, A. Patterson and 14 other author(s). Nat Meth, 9 (3): 245--253 (March 2012)
10 years ago by @alex_ruff
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databaseframeworksoftwareweb
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4A call for bioimaging software usability
A. Carpenter, L. Kamentsky, and K. Eliceiri. Nat Meth, 9 (7): 666--670 (July 2012)
10 years ago by @alex_ruff
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image_processing
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image_processingsoftwarevisualization
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1Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
F. Amat, W. Lemon, D. Mossing, K. McDole, Y. Wan, K. Branson, E. Myers, and P. Keller. Nat Meth, 11 (9): 951--958 (September 2014)
10 years ago by @alex_ruff
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biology
cells
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of_applications
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biologycellsmicroscopyof_applicationsoptical_flowsegmentationsoftwareto_READtrackingzebrafish
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1The iRoCS Toolbox – 3D analysis of the plant root apical meristem at cellular resolution
T. Schmidt, T. Pasternak, K. Liu, T. Blein, D. Aubry-Hivet, A. Dovzhenko, J. Duerr, W. Teale, F. Ditengou, H. Burkhardt and 2 other author(s). The Plant Journal, 77 (5): 806--814 (2014)
10 years ago by @alex_ruff
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filtering
plants
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biologyfilteringplantsregistrationsegmentationsoftwareto_READ
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1A virtual world of paleontology
J. Cunningham, I. Rahman, S. Lautenschlager, E. Rayfield, and P. Donoghue. Trends in Ecology & Evolution, 29 (6): 347 - 357 (2014)
10 years ago by @alex_ruff
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3Dapplicationsbiologygraphicssoftwaresurveytomography
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3NIH Image to ImageJ: 25 years of image analysis
C. Schneider, W. Rasband, and K. Eliceiri. Nat Meth, 9 (7): 671--675 (July 2012)
10 years ago by @alex_ruff
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2Robust single-particle tracking in live-cell time-lapse sequences
K. Jaqaman, D. Loerke, M. Mettlen, H. Kuwata, S. Grinstein, S. Schmid, and G. Danuser. Nat Meth, 5 (8): 695--702 (August 2008)
10 years ago by @alex_ruff
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biologycellsdata_analysisin-vivomedicalmotion_analysissoftwaretracking
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3User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability
P. Yushkevich, J. Piven, H. Hazlett, R. Smith, S. Ho, J. Gee, and G. Gerig. Neuroimage, 31 (3): 1116-1128 (July 2006)
11 years ago by @alex_ruff
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2Softshell: dynamic scheduling on GPUs
M. Steinberger, B. Kainz, B. Kerbl, S. Hauswiesner, M. Kenzel, and D. Schmalstieg. ACM Trans. Graph., 31 (6): 161:1--161:11 (November 2012)
11 years ago by @alex_ruff
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1Software tools, data structures, and interfaces for microscope imaging
N. Stuurman, and J. Swedlow. Cold Spring Harb Protoc, 2012 (1): 50-61 (January 2012)
11 years ago by @alex_ruff
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data_analysis
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microscopy
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data_analysisimage_processingimagingmicroscopysoftwaresurvey
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2Visualization of image data from cells to organisms
T. Walter, D. Shattuck, R. Baldock, M. Bastin, A. Carpenter, S. Duce, J. Ellenberg, A. Fraser, N. Hamilton, S. Pieper and 4 other author(s). Nat Methods, 7 (3 Suppl): 26-41 (March 2010)
11 years ago by @alex_ruff
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14D imaging to assay complex dynamics in live specimens
D. Gerlich, and J. Ellenberg. Nat Cell Biol, (September 2003)
11 years ago by @alex_ruff
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3dbiologyimage_processingimagingsegmentationsoftwaresurveytomography
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1Image processing pipeline for synchrotron-radiation-based tomographic microscopy
C. Hintermüller, F. Marone, A. Isenegger, and M. Stampanoni. Journal of Synchrotron Radiation, 17 (4): 550--559 (July 2010)
11 years ago by @alex_ruff
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1Biological imaging software tools
K. Eliceiri, M. Berthold, I. Goldberg, L. Ibanez, B. Manjunath, M. Martone, R. Murphy, H. Peng, A. Plant, B. Roysam and 4 other author(s). Nat Meth, 9 (7): 697--710 (July 2012)
11 years ago by @alex_ruff
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3Chapter 17: Bioimage Informatics for Systems Pharmacology
F. Li, Z. Yin, G. Jin, H. Zhao, and S. Wong. PLoS Comput Biol, 9 (4): e1003043 (April 2013)
11 years ago by @alex_ruff
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4Fiji: an open-source platform for biological-image analysis
J. Schindelin, I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair, T. Pietzsch, S. Preibisch, C. Rueden, S. Saalfeld, B. Schmid and 6 other author(s). Nat Meth, 9 (7): 676--682 (July 2012)
11 years ago by @alex_ruff
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1Pore3D: A software library for quantitative analysis of porous media
F. Brun, L. Mancini, P. Kasae, S. Favretto, D. Dreossi, and G. Tromba. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 615 (3): 326 - 332 (2010)
11 years ago by @alex_ruff
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foams
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2Chaste: An Open Source C++ Library for Computational Physiology and Biology
G. Mirams, C. Arthurs, M. Bernabeu, R. Bordas, J. Cooper, A. Corrias, Y. Davit, S. Dunn, A. Fletcher, D. Harvey and 7 other author(s). PLoS Comput Biol, 9 (3): e1002970 (March 2013)
11 years ago by @alex_ruff
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biology
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