Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity.bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace.bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.
Description
bioSyntax: syntax highlighting for computational biology. - PubMed - NCBI
%0 Journal Article
%1 Babaian:2018:BMC-Bioinformatics:30134911
%A Babaian, A
%A Ebou, A
%A Fegen, A
%A Kam, H Y
%A Novakovsky, G E
%A Wong, J
%A Aïssi, D
%A Yao, L
%D 2018
%J BMC Bioinformatics
%K 2018 biology gene paper
%N 1
%P 303-303
%R 10.1186/s12859-018-2315-y
%T bioSyntax: syntax highlighting for computational biology
%U https://www.ncbi.nlm.nih.gov/pubmed/30134911
%V 19
%X Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity.bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace.bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.
@article{Babaian:2018:BMC-Bioinformatics:30134911,
abstract = {Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity.bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace.bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.},
added-at = {2018-10-05T21:02:10.000+0200},
author = {Babaian, A and Ebou, A and Fegen, A and Kam, H Y and Novakovsky, G E and Wong, J and A{\"i}ssi, D and Yao, L},
biburl = {https://www.bibsonomy.org/bibtex/21981b59364ee3972c08e37811363acd3/analyst},
description = {bioSyntax: syntax highlighting for computational biology. - PubMed - NCBI},
doi = {10.1186/s12859-018-2315-y},
interhash = {8a72a32e75c0eab91dc08f8b3df03a84},
intrahash = {1981b59364ee3972c08e37811363acd3},
journal = {BMC Bioinformatics},
keywords = {2018 biology gene paper},
month = aug,
number = 1,
pages = {303-303},
pmid = {30134911},
timestamp = {2018-10-05T21:02:10.000+0200},
title = {bioSyntax: syntax highlighting for computational biology},
url = {https://www.ncbi.nlm.nih.gov/pubmed/30134911},
volume = 19,
year = 2018
}