Automatic creation of a genetic network for the lac
operon from observed data by means of genetic
programming
G. Lanza, W. Mydlowec, and J. Koza. First International Conference on Systems Biology
(ICSB), Tokyo, (14-16 November 2000)
Abstract
This paper demonstrates that it is possible to use
genetic programming to automatically create (reverse
engineer) a computer program representing the logic
underlying the genetic network for the expression level
of the lac operon (composed of the Z, Y, and A genes)
as measured by its mRNA. Genetic programming starts
with observed time-domain expression levels of two
genes (REPRESSOR or CAP) and the concentrations of two
substances (GLUCOSE or LACTOSE) and automatically
creates both a topological arrangement of conditional
and comparative functions as well as all necessary
numerical parameters of a genetic network whose
behavior matches observed time-domain data.
%0 Conference Paper
%1 lanza:2000:ICSB
%A Lanza, Guido
%A Mydlowec, William
%A Koza, John R.
%B First International Conference on Systems Biology
(ICSB)
%C Tokyo
%D 2000
%K Biology, algorithms, engineering, genetic lac networks, operon programming, reverse
%T Automatic creation of a genetic network for the lac
operon from observed data by means of genetic
programming
%U http://www.genetic-programming.com/jkpdf/icsb2000geneticnetwork.pdf
%X This paper demonstrates that it is possible to use
genetic programming to automatically create (reverse
engineer) a computer program representing the logic
underlying the genetic network for the expression level
of the lac operon (composed of the Z, Y, and A genes)
as measured by its mRNA. Genetic programming starts
with observed time-domain expression levels of two
genes (REPRESSOR or CAP) and the concentrations of two
substances (GLUCOSE or LACTOSE) and automatically
creates both a topological arrangement of conditional
and comparative functions as well as all necessary
numerical parameters of a genetic network whose
behavior matches observed time-domain data.
@inproceedings{lanza:2000:ICSB,
abstract = {This paper demonstrates that it is possible to use
genetic programming to automatically create (reverse
engineer) a computer program representing the logic
underlying the genetic network for the expression level
of the lac operon (composed of the Z, Y, and A genes)
as measured by its mRNA. Genetic programming starts
with observed time-domain expression levels of two
genes (REPRESSOR or CAP) and the concentrations of two
substances (GLUCOSE or LACTOSE) and automatically
creates both a topological arrangement of conditional
and comparative functions as well as all necessary
numerical parameters of a genetic network whose
behavior matches observed time-domain data.},
added-at = {2008-06-19T17:35:00.000+0200},
address = {Tokyo},
author = {Lanza, Guido and Mydlowec, William and Koza, John R.},
biburl = {https://www.bibsonomy.org/bibtex/265f68a2034c69897870d13f23555b08b/brazovayeye},
booktitle = {First International Conference on Systems Biology
(ICSB)},
interhash = {4c26a230acfe9da1eab6839a974b16e2},
intrahash = {65f68a2034c69897870d13f23555b08b},
keywords = {Biology, algorithms, engineering, genetic lac networks, operon programming, reverse},
month = {14-16 November},
notes = {ICSB-2000 8 Feb 2001 ghostview and our printers barf
at icsb2000gn.ps population size 10,000},
organisation = {Japan Society for Bioinformatics},
timestamp = {2008-06-19T17:45:09.000+0200},
title = {Automatic creation of a genetic network for the lac
operon from observed data by means of genetic
programming},
url = {http://www.genetic-programming.com/jkpdf/icsb2000geneticnetwork.pdf},
year = 2000
}