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Efficient approximations for learning phylogenetic HMM models from data.

, , , , , , and . ISMB/ECCB (Supplement of Bioinformatics), page 161-168. (2004)

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Learning Microbial Interaction Networks from Metagenomic Count Data., , , , and . RECOMB, volume 9029 of Lecture Notes in Computer Science, page 32-43. Springer, (2015)Population Sequencing Using Short Reads: HIV as a Case Study., , and . Pacific Symposium on Biocomputing, page 114-125. World Scientific, (2008)Learning Microbial Interaction Networks from Metagenomic Count Data., , , , and . J. Comput. Biol., 23 (6): 526-535 (2016)Classification of Prostate Cancer Grades and T-Stages Based on Tissue Elasticity Using Medical Image Analysis., , , , , and . MICCAI (1), volume 9900 of Lecture Notes in Computer Science, page 627-635. (2016)Joint discovery of haplotype blocks and complex trait associations from SNP sequences, , and . CoRR, (2012)Genovo: De Novo Assembly for Metagenomes., , and . RECOMB, volume 6044 of Lecture Notes in Computer Science, page 341-356. Springer, (2010)AMP: Assembly Matching Pursuit., and . Pacific Symposium on Biocomputing, page 175-187. World Scientific Publishing, (2013)An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data., , and . RECOMB, volume 8394 of Lecture Notes in Computer Science, page 69-84. Springer, (2014)Genovo: De Novo Assembly for Metagenomes., , and . J. Comput. Biol., 18 (3): 429-443 (2011)Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al., , , , , , , and . PLoS Comput. Biol., (2008)