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Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming.

, , , , and . AISTATS, volume 5 of JMLR Proceedings, page 41-48. JMLR.org, (2009)

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atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding., , , , and . Bioinform., 35 (15): 2657-2659 (2019)scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data., , and . Bioinform., 38 (14): 3642-3644 (2022)dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data., , , , , , and . PLoS Comput. Biol., (2013)A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets., , and . RECOMB, volume 9649 of Lecture Notes in Computer Science, page 19-36. Springer, (2016)AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver., , and . Bioinform., (April 2023)Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping., , , , , , and . PLoS Comput. Biol., (2015)atSNPInfrastructure, a Case Study for Searching Billions of Records While Providing Significant Cost Savings over Cloud Providers., , , , and . IPDPS Workshops, page 497-506. IEEE Computer Society, (2018)CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure., , and . Pacific Symposium on Biocomputing, page 515-526. World Scientific, (2008)Regulatory motif finding by logic regression., , and . Bioinform., 20 (16): 2799-2811 (2004)eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression., and . Handbook of Statistical Bioinformatics, Springer, (2011)