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Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks.

, , , , and . BMC Bioinform., (2016)

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Semantically linking molecular entities in literature through entity relationships., , , , , and . BMC Bioinform., 13 (S-11): S6 (2012)PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations., , , , , , , and . BioNLP@HLT-NAACL, page 82-90. Association for Computational Linguistics, (2012)Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations., , , , , and . Adv. Bioinformatics, (2012)EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions., , , and . BioNLP@ACL, page 28-37. Association for Computational Linguistics, (2011)Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction., , , and . BioNLP@ACL (Shared Task), page 147-148. Association for Computational Linguistics, (2011)spaCy: Industrial-strength Natural Language Processing in Python, , , and . (2020)Event based text mining for integrated network construction., , and . MLSB, volume 8 of JMLR Proceedings, page 112-121. JMLR.org, (2010)Integration of Static Relations to Enhance Event Extraction from Text., , , and . BioNLP@ACL, page 144-152. Association for Computational Linguistics, (2010)Analyzing text in search of bio-molecular events: a high-precision machine learning framework., , , and . BioNLP@HLT-NAACL (Shared Task), page 128-136. Association for Computational Linguistics, (2009)Cell line name recognition in support of the identification of synthetic lethality in cancer from text., , , , , and . Bioinform., 32 (2): 276-282 (2016)