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Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning.

, , , , , , , and . AlCoB, volume 12715 of Lecture Notes in Computer Science, page 16-28. Springer, (2021)

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PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text., , , , , and . BMC Bioinform., 13 (S-5): S2 (2012)ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization., , , , , , and . Nucleic Acids Res., 34 (Web-Server-Issue): 440-443 (2006)ASPicDB: A database resource for alternative splicing analysis., , , , , , , , , and 5 other author(s). Bioinform., 24 (10): 1300-1304 (2008)Divide and Conquer Computation of the Multi-string BWT and LCP Array., , , , , and . CiE, volume 10936 of Lecture Notes in Computer Science, page 107-117. Springer, (2018)Character-Based Phylogeny Construction and Its Application to Tumor Evolution., , , and . CiE, volume 10307 of Lecture Notes in Computer Science, page 3-13. Springer, (2017)ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences., , and . BMC Bioinform., (2005)Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach., , , , , and . J. Comput. Biol., 16 (1): 43-66 (2009)Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs., , , , and . J. Comput. Biol., 21 (1): 16-40 (2014)Minimum Factorization Agreement of Spliced ESTs., , , , and . WABI, volume 5724 of Lecture Notes in Computer Science, page 1-12. Springer, (2009)Species-Driven Persistent Phylogeny., , , , and . Fundam. Informaticae, 154 (1-4): 47-63 (2017)