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AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa., , , and . BMC Bioinform., (2007)Panoramic Insights into Microevolution and Macroevolution of A Prevotella copri-containing Lineage in Primate Guts., , , , , , , and . Genom. Proteom. Bioinform., 20 (2): 334-349 (2022)Genome sequence-based species delimitation with confidence intervals and improved distance functions., , , and . BMC Bioinform., (2013)1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life, , , , , , , , , and 11 other author(s). Nature Biotechnology, (Jun 12, 2017)Highly parallelized inference of large genome-based phylogenies., , , and . Concurr. Comput. Pract. Exp., 26 (10): 1715-1729 (2014)COPYCAT : cophylogenetic analysis tool., , , and . Bioinform., 23 (7): 898-900 (2007)Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats, , , , , , , , , and . ISME J, 11 (6): 1483--1499 (June 2017)Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets., , , , , , and . PLoS Comput. Biol., (2016)VICTOR: genome-based phylogeny and classification of prokaryotic viruses., and . Bioinform., 33 (21): 3396-3404 (2017)TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes., , , and . Nucleic Acids Res., 50 (D1): 801-807 (2022)