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Computational and Statistical Analysis of Protein Mass Spectrometry Data., and . PLoS Comput. Biol., (2012)The effect of replication on gene expression microarray experiments., , and . Bioinform., 19 (13): 1620-1627 (2003)Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions., , , and . RECOMB, volume 4453 of Lecture Notes in Computer Science, page 459-472. Springer, (2007)Learning kernels from biological networks by maximizing entropy., and . ISMB/ECCB (Supplement of Bioinformatics), page 326-333. (2004)Metric learning pairwise kernel for graph inference, , and . CoRR, (2006)Efficient identification of DNA hybridization partners in a sequence database., and . ISMB (Supplement of Bioinformatics), page 350-358. (2006)Learning to predict protein-protein interactions from protein sequences., , and . Bioinform., 19 (15): 1875-1881 (2003)Kernel hierarchical gene clustering from microarray expression data., , and . Bioinform., 19 (16): 2097-2104 (2003)Semi-supervised protein classification using cluster kernels., , , , , and . Bioinform., 21 (15): 3241-3247 (2005)Response to comments on 'Empirical comparison of web-based antimicrobial peptide prediction tools'., and . Bioinform., 35 (15): 2695-2696 (2019)