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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

L. Heirendt, S. Arreckx, T. Pfau, S. Mendoza, A. Richelle, A. Heinken, H. Haraldsdóttir, J. Wachowiak, S. Keating, V. Vlasov, S. Magnusdóttir, C. Ng, G. Preciat, A. Žagare, S. Chan, M. Aurich, C. Clancy, J. Modamio, J. Sauls, A. Noronha, A. Bordbar, B. Cousins, D. El Assal, L. Valcarcel, I. Apaolaza, S. Ghaderi, M. Ahookhosh, M. Ben Guebila, A. Kostromins, N. Sompairac, H. Le, D. Ma, Y. Sun, L. Wang, J. Yurkovich, M. Oliveira, P. Vuong, L. El Assal, I. Kuperstein, A. Zinovyev, H. Hinton, W. Bryant, F. Aragón Artacho, F. Planes, E. Stalidzans, A. Maass, S. Vempala, M. Hucka, M. Saunders, C. Maranas, N. Lewis, T. Sauter, B. Palsson, I. Thiele, and R. Fleming. Nature Protocols, 14 (3): 639--702 (2019)
DOI: 10.1038/s41596-018-0098-2

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Ute Saunders

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On GSOR, the Generalized Successive Overrelaxation Method for Double Saddle-Point Problems.N. Huang, Y. Dai, D. Orban, and M. Saunders. SIAM J. Sci. Comput., 45 (5): 2185- (October 2023)ALGORITHM xxx: MINRES-QLP for Singular Symmetric and Hermitian Linear Equations and Least-Squares ProblemsS. Choi, and M. Saunders. CoRR, (2013)On GSOR, the Generalized Successive Overrelaxation Method for Double Saddle-Point Problems.N. Huang, Y. Dai, D. Orban, and M. Saunders. CoRR, (2022)A semi-conjugate gradient method for solving unsymmetric positive definite linear systems.N. Huang, Y. Dai, D. Orban, and M. Saunders. CoRR, (2022)On projected newton barrier methods for linear programming and an equivalence to Karmarkar's projective method.P. Gill, W. Murray, M. Saunders, J. Tomlin, and M. Wright. Math. Program., 36 (2): 183-209 (1986)Equispaced Pareto front construction for constrained bi-objective optimization.V. Pereyra, M. Saunders, and J. Castillo. Math. Comput. Model., 57 (9-10): 2122-2131 (2013)MINRES-QLP: a Krylov subspace method for indefinite or singular symmetric systemsS. Choi, C. Paige, and M. Saunders. CoRR, (2010)LSMR: An iterative algorithm for sparse least-squares problemsD. Fong, and M. Saunders. CoRR, (2010)Atomic Decomposition by Basis Pursuit.S. Chen, D. Donoho, and M. Saunders. SIAM J. Sci. Comput., 20 (1): 33-61 (1998)Implementing a Smooth Exact Penalty Function for Equality-Constrained Nonlinear Optimization.R. Estrin, M. Friedlander, D. Orban, and M. Saunders. SIAM J. Sci. Comput., 42 (3): A1809-A1835 (2020)

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Disambiguation of "Saunders, Michael A."

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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Please choose a person to relate this publication to

Ute Saunders

Mareike Saunders

Constanze Saunders

Timothy Saunders

Brigitte Saunders

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Saunders, Michael A."

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Please choose a person to relate this publication to

Ute Saunders

Mareike Saunders

Constanze Saunders

Timothy Saunders

Brigitte Saunders

Other publications of authors with the same name

Disambiguation

copy delete add this publication to your clipboard
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URL
DOI
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Chicago
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0