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regionReport: Interactive reports for region-based analyses., , and . F1000Research, (2015)BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data., , , and . BMC Bioinform., 24 (1): 340 (December 2023)Megadepth: efficient coverage quantification for BigWigs and BAMs., , , , , and . Bioinform., 37 (18): 3014-3016 (2021)Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses., , , , , , , , , and 2 other author(s). BMC Bioinform., 22 (1): 381 (2021)RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)., , , , , , , , , and 18 other author(s). Nucleic Acids Res., 39 (Database-Issue): 98-105 (2011)Programmatic access to bacterial regulatory networks with regutools., , , , , , and . Bioinform., 36 (16): 4532-4534 (2020)Rail-RNA: scalable analysis of RNA-seq splicing and coverage., , , , , , , , and . Bioinform., 33 (24): 4033-4040 (2017)SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor., , , , , , , , and . Bioinform., 38 (11): 3128-3131 (2022)SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses., , , , , , , , , and 2 other author(s). BMC Bioinform., 22 (1): 224 (2021)IntroVerse: a comprehensive database of introns across human tissues., , , , , , , , , and . Nucleic Acids Res., 51 (D1): 167-178 (January 2023)