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Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds., , , , , and . PLoS Comput. Biol., (2022)A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types., , , , , , , , and . PLoS Comput. Biol., (2019)The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions., , , , , , , and . PLoS Comput. Biol., (2023)Ten Simple Rules for Reproducible Research in Jupyter Notebooks., , , , , , , , , and 1 other author(s). CoRR, (2018)A Domain Decomposition Method for Solution of a PDE-Constrained Generalized Nash Equilibrium Model of Biofilm Community Metabolism., , , , , and . SIAM J. Appl. Math., 84 (1): 97-113 (February 2024)Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks., , , , , , , , , and 1 other author(s). PLoS Comput. Biol., (2019)Unraveling interactions in microbial communities - from co-cultures to microbiomes, , and . 53 (5): 295--305 (2015)