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Inferring causal molecular networks: empirical assessment through a community-based effort

S. Hill, L. Heiser, T. Cokelaer, M. Unger, N. Nesser, D. Carlin, Y. Zhang, A. Sokolov, E. Paull, C. Wong, K. Graim, A. Bivol, H. Wang, F. Zhu, B. Afsari, L. Danilova, A. Favorov, W. Lee, D. Taylor, C. Hu, B. Long, D. Noren, A. Bisberg, B. Afsari, R. Al-Ouran, B. Anton, T. Arodz, O. Sichani, N. Bagheri, N. Berlow, A. Bisberg, A. Bivol, A. Bohler, J. Bonet, R. Bonneau, G. Budak, R. Bunescu, M. Caglar, B. Cai, C. Cai, D. Carlin, A. Carlon, L. Chen, M. Ciaccio, T. Cokelaer, G. Cooper, C. Creighton, S. Daneshmand, A. de la Fuente, B. Di Camillo, L. Danilova, J. Dutta-Moscato, K. Emmett, C. Evelo, M. Fassia, A. Favorov, E. Fertig, J. Finkle, F. Finotello, S. Friend, X. Gao, J. Gao, J. Garcia-Garcia, S. Ghosh, A. Giaretta, K. Graim, J. Gray, R. Großeholz, Y. Guan, J. Guinney, C. Hafemeister, O. Hahn, S. Haider, T. Hase, L. Heiser, S. Hill, J. Hodgson, B. Hoff, C. Hsu, C. Hu, Y. Hu, X. Huang, M. Jalili, X. Jiang, T. Kacprowski, L. Kaderali, M. Kang, V. Kannan, M. Kellen, K. Kikuchi, D. Kim, H. Kitano, B. Knapp, G. Komatsoulis, H. Koeppl, A. Krämer, M. Kursa, M. Kutmon, W. Lee, Y. Li, X. Liang, Z. Liu, Y. Liu, B. Long, S. Lu, X. Lu, M. Manfrini, M. Matos, D. Meerzaman, G. Mills, W. Min, S. Mukherjee, C. Müller, R. Neapolitan, N. Nesser, D. Noren, T. Norman, B. Oliva, S. Opiyo, R. Pal, A. Palinkas, E. Paull, J. Planas-Iglesias, D. Poglayen, A. Qutub, J. Saez-Rodriguez, F. Sambo, T. Sanavia, A. Sharifi-Zarchi, J. Slawek, A. Sokolov, M. Song, P. Spellman, A. Streck, G. Stolovitzky, S. Strunz, J. Stuart, D. Taylor, J. Tegnér, K. Thobe, G. Toffolo, E. Trifoglio, M. Unger, Q. Wan, H. Wang, L. Welch, C. Wong, J. Wu, A. Xue, R. Yamanaka, C. Yan, S. Zairis, M. Zengerling, H. Zenil, S. Zhang, Y. Zhang, F. Zhu, Z. Zi, G. Mills, J. Gray, M. Kellen, T. Norman, S. Friend, A. Qutub, E. Fertig, Y. Guan, M. Song, J. Stuart, P. Spellman, H. Koeppl, G. Stolovitzky, J. Saez-Rodriguez, and S. Mukherjee. Nature Methods, 13 (4): 310--318 (Feb 22, 2016)
DOI: 10.1038/nmeth.3773

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Emmanuel Planas

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ArchDB 2014: structural classification of loops in proteins.J. Bonet, J. Planas-Iglesias, J. García-García, M. Marín-López, N. Fernandez-Fuentes, and B. Oliva. Nucleic Acids Res., 42 (Database-Issue): 315-319 (2014)On the Analysis of the Intersection of the Interactome and the Metabolome.J. Planas-Iglesias, D. Aguilar, and B. Oliva. Spanish Bioinformatics Conference, page 68-69. Technical University of Catalonia, Barcelona, (2004)LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.J. Planas-Iglesias, F. Opálený, P. Ulbrich, J. Stourac, Z. Sanusi, G. Pinto, A. Schenkmayerova, J. Byska, J. Damborský, B. Kozlíková and 1 other author(s). Nucleic Acids Res., 50 (W1): 465-473 (2022)SBILib: a handle for protein modeling and engineering.P. Gohl, J. Bonet, O. Fornes, J. Planas-Iglesias, N. Fernandez-Fuentes, and B. Oliva. Bioinform., (October 2023)Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.J. Bonet, J. Segura, J. Planas-Iglesias, B. Oliva, and N. Fernandez-Fuentes. Bioinform., 30 (13): 1935-1936 (2014)iLoops: a protein-protein interaction prediction server based on structural features.J. Planas-Iglesias, M. Marín-López, J. Bonet, J. García-García, and B. Oliva. Bioinform., 29 (18): 2360-2362 (2013)Inferring causal molecular networks: empirical assessment through a community-based effortS. Hill, L. Heiser, T. Cokelaer, M. Unger, N. Nesser, D. Carlin, Y. Zhang, A. Sokolov, E. Paull, C. Wong and 163 other author(s). Nature Methods, 13 (4): 310--318 (Feb 22, 2016)Biana: a software framework for compiling biological interactions and analyzing networks.J. García-García, E. Guney, R. Aragues, J. Planas-Iglesias, and B. Oliva. BMC Bioinform., (2010)PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning.J. Stourac, S. Borko, R. Khan, P. Pokorna, A. Dobias, J. Planas-Iglesias, S. Mazurenko, G. Pinto, V. Szotkowska, J. Sterba and 3 other author(s). Briefings Bioinform., (November 2023)On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.M. Marín-López, J. Planas-Iglesias, J. Aguirre-Plans, J. Bonet, J. García-García, N. Fernandez-Fuentes, and B. Oliva. Bioinform., 34 (4): 592-598 (2018)

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Disambiguation of "Planas-Iglesias, Joan"

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Inferring causal molecular networks: empirical assessment through a community-based effort

Please choose a person to relate this publication to

Emmanuel Planas

Urania Joannou

Antonio Iglesias

Pablo Iglesias

Javier Iglesias

Other publications of authors with the same name

Disambiguation

BibSonomy

Disambiguation of "Planas-Iglesias, Joan"

copydeleteadd this publication to your clipboardcommunity posthistory of this postURLDOIBibTeXEndNoteAPAChicagoDIN 1505HarvardMSOffice XML Inferring causal molecular networks: empirical assessment through a community-based effort

Please choose a person to relate this publication to

Emmanuel Planas

Urania Joannou

Antonio Iglesias

Pablo Iglesias

Javier Iglesias

Other publications of authors with the same name

Disambiguation

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URL
DOI
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Inferring causal molecular networks: empirical assessment through a community-based effort