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110 Things Software Developers Should Learn about Learning
N. Brown, F. Hermans, and L. Margulieux. Commun. ACM, 67 (1): 78–87 (Dec 21, 2023)
9 months ago by @jaeschke
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development
software
cognition
learning
programming
theory
developmentsoftwarecognitionlearningprogrammingtheory
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1Neural-network applications for analysis of adverse drug reactions.
T. Alvager, T. Smith, and F. Vijai. Biomedical instrumentation & technology / Association for the Advancement of Medical Instrumentation, 27 (5): 408-11 (1993)2662.
2 years ago by @jepcastel
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AntidepressiveAgents:adverseeffects
NeuralNetworks(Computer)
Software
AntidepressiveAgents
AdverseDrugReactionReportingSystems
Microcomputers
AntidepressiveAgents:adverseeffectsNeuralNetworks(Computer)SoftwareAntidepressiveAgentsAdverseDrugReactionReportingSystemsMicrocomputers
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1A simple method of sample size calculation for linear and logistic regression.
F. Hsieh, D. Bloch, and M. Larsen. Statistics in medicine, 17 (14): 1623-34 (July 1998)2461<m:linebreak></m:linebreak>Sample size.
2 years ago by @jepcastel
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MathematicalComputing
SampleSize
Humans
LogisticModels
Software
MathematicalComputingSampleSizeHumansLogisticModelsSoftware
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1Logistic random effects regression models: a comparison of statistical packages for binary and ordinal outcomes.
B. Li, H. Lingsma, E. Steyerberg, and E. Lesaffre. BMC medical research methodology, (January 2011)6214<m:linebreak></m:linebreak>JID: 100968545; OID: NLM: PMC3112198; 2010/08/25 received; 2011/05/23 accepted; 2011/05/23 aheadofprint; epublish;<m:linebreak></m:linebreak>Regressió logística; Mixed models; Multilevel; SAS; R; Stata.
2 years ago by @jepcastel
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RCT
Humans
BrainInjuries
ComputingMethodologies
Statistical
LogisticModels
Software
BayesTheorem
DataInterpretation
RCTHumansBrainInjuriesComputingMethodologiesStatisticalLogisticModelsSoftwareBayesTheoremDataInterpretation
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1ANGHABENCH: A Suite with One Million Compilable C Benchmarks for Code-Size Reduction
A. da Silva, B. Kind, J. de Souza Magalhaes, J. Rocha, B. Guimaraes, and F. Pereira. 2021 IEEE/ACM International Symposium on Code Generation and Optimization (CGO), page 378-390. Los Alamitos, CA, USA, IEEE Computer Society, (March 2021)
4 years ago by @gron
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computer
optimization
languages
software
testing
training
processors
source
program
open
synthesizers
benchmark
computeroptimizationlanguagessoftwaretestingtrainingprocessorssourceprogramopensynthesizersbenchmark
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1CopywriteR: DNA copy number detection from off-target sequence data
T. Kuilman, A. Velds, K. Kemper, M. Ranzani, L. Bombardelli, M. Hoogstraat, E. Nevedomskaya, G. Xu, J. de Ruiter, M. Lolkema and 7 other author(s). Genome Biology, 16 (1): 49 (Feb 27, 2015)
4 years ago by @marcsaric
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software
cancer-research
ngs
fulltext
structural-variation
softwarecancer-researchngsfulltextstructural-variation
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1Qualimap: evaluating next-generation sequencing alignment data
F. Garc\'ıa-Alcalde, K. Okonechnikov, J. Carbonell, L. Cruz, S. Götz, S. Tarazona, J. Dopazo, T. Meyer, and A. Conesa. Bioinformatics, 28 (20): 2678--2679 (2012)
4 years ago by @marcsaric
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mustread
software
quality-control
next-generation-sequencing
fulltext
mustreadsoftwarequality-controlnext-generation-sequencingfulltext
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1VIVA (VIsualization of VAriants): A VCF File Visualization Tool
G. Tollefson, J. Schuster, F. Gelin, A. Agudelo, A. Ragavendran, I. Restrepo, P. Stey, J. Padbury, and A. Uzun. Scientific Reports, 9 (1): 12648-- (2019)
4 years ago by @marcsaric
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shouldread
software
variant-calling
vcf
fulltext
shouldreadsoftwarevariant-callingvcffulltext
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1Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
K. Ellrott, M. Bailey, G. Saksena, K. Covington, C. Kandoth, C. Stewart, J. Hess, S. Ma, K. Chiotti, M. McLellan and 730 other author(s). Cell Systems, 6 (3): 271--281.e7 (March 2018)
4 years ago by @marcsaric
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shouldread
wxs
exome
software
cancer-research
variant-calling
pan-cancer
fulltext
shouldreadwxsexomesoftwarecancer-researchvariant-callingpan-cancerfulltext
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1Systematic discovery of complex insertions and deletions in human cancers
K. Ye, J. Wang, R. Jayasinghe, E. Lameijer, J. McMichael, J. Ning, M. McLellan, M. Xie, S. Cao, V. Yellapantula and 10 other author(s). Nature Medicine, 22 (1): 97--104 (2016)
4 years ago by @marcsaric
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shouldread
software
cancer-research
variant-calling
whole-genome-sequencing
indel
fulltext
shouldreadsoftwarecancer-researchvariant-callingwhole-genome-sequencingindelfulltext
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1PaCBAM: fast and scalable processing of whole exome and targeted sequencing data
S. Valentini, T. Fedrizzi, F. Demichelis, and A. Romanel. BMC Genomics, 20 (1): 1018-1018 (December 2019)
4 years ago by @marcsaric
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shouldread
sequencing-depth
software
open-source
sequencing
coverage
fulltext
shouldreadsequencing-depthsoftwareopen-sourcesequencingcoveragefulltext
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1ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy
L. von Chamier, J. Jukkala, C. Spahn, M. Lerche, S. Hernández pérez, P. Mattila, E. Karinou, S. Holden, A. Solak, A. Krull and 7 other author(s). bioRxiv, (March 2020)
5 years ago by @kfriedl
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deep-learning
imaging
software
superresolution
microscopy
ML
deep-learningimagingsoftwaresuperresolutionmicroscopyML
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1Artificial intelligence for microscopy: What you should know
L. von Chamier, R. Laine, and R. Henriques. Biochemical Society Transactions, 47 (4): 1029--1040 (July 2019)
5 years ago by @kfriedl
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software
AI
microscopy
softwareAImicroscopy
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1NanoJ: a high-performance open-source super-resolution microscopy toolbox
R. Laine, K. Tosheva, N. Gustafsson, R. Gray, P. Almada, D. Albrecht, G. Risa, F. Hurtig, A. Lind\aas, B. Baum and 5 other author(s). bioRxiv, (2018)
5 years ago by @kfriedl
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tracing
imagej
software
quantitative
tracingimagejsoftwarequantitative
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1Enter the Matrix: Factorization Uncovers Knowledge from Omics
G. Stein-O'Brien, R. Arora, A. Culhane, A. Favorov, L. Garmire, C. Greene, L. Goff, Y. Li, A. Ngom, M. Ochs and 2 other author(s). Trends Genet, 34 (10): 790-805 (October 2018)
5 years ago by @marcsaric
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shouldread
software
statistics
fulltext
shouldreadsoftwarestatisticsfulltext
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1A test metric for assessing single-cell RNA-seq batch correction
M. Büttner, Z. Miao, F. Wolf, S. Teichmann, and F. Theis. Nat Methods, 16 (1): 43-49 (January 2019)
5 years ago by @marcsaric
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shouldread
paywall
batch-effect
software
rna-seq
benchmark
shouldreadpaywallbatch-effectsoftwarerna-seqbenchmark
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1Next-generation sequencing in routine brain tumor diagnostics enables an integrated diagnosis and identifies actionable targets
F. Sahm, D. Schrimpf, D. Jones, J. Meyer, A. Kratz, D. Reuss, D. Capper, C. Koelsche, A. Korshunov, B. Wiestler and 18 other author(s). Acta Neuropathol, 131 (6): 903-910 (June 2016)
5 years ago by @marcsaric
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mustread
paywall
dkfz
software
cancer-research
glioma
martin_glas
mustreadpaywalldkfzsoftwarecancer-researchgliomamartin_glas
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1deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
A. McPherson, F. Hormozdiari, A. Zayed, R. Giuliany, G. Ha, M. Sun, M. Griffith, A. Heravi Moussavi, J. Senz, N. Melnyk and 7 other author(s). PLOS Computational Biology, 7 (5): 1-16 (May 2011)
6 years ago by @marcsaric
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mustread
rna
software
tcga-lgg
cancer-research
glioma
low-grade
rna-seq
tcga
fulltext
mustreadrnasoftwaretcga-lggcancer-researchgliomalow-graderna-seqtcgafulltext
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1OUTRIDER: A Statistical Method for Detecting Aberrantly Expressed Genes in RNA Sequencing Data
F. Brechtmann, C. Mertes, A. Matusevičiūtė, V. Yépez, Ž. Avsec, M. Herzog, D. Bader, H. Prokisch, and J. Gagneur. Am J Hum Genet, 103 (6): 907-917 (December 2018)
6 years ago by @marcsaric
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detection
deg
software
outlier
differential-expression
open-source
MUSTREAD
rna-seq
detectiondegsoftwareoutlierdifferential-expressionopen-sourceMUSTREADrna-seq
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3Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
S. Sahraeian, M. Mohiyuddin, R. Sebra, H. Tilgner, P. Afshar, K. Au, N. Bani Asadi, M. Gerstein, W. Wong, M. Snyder and 2 other author(s). Nat Commun, 8 (1): 59-59 (July 2017)
6 years ago by @marcsaric
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comparison
pipeline
software
MUSTREAD
snv
rna-seq
fulltext
benchmark
comparisonpipelinesoftwareMUSTREADsnvrna-seqfulltextbenchmark
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publications (hide)166 displayallpublications onlypublications per page5102050100 sort byadded attitleauthorpublication dateentry typehelp for advanced sorting... RSSBibTeXRDFmore...

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publications (hide)166
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