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1PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations
A. Brisbin, K. Bryc, J. Byrnes, F. Zakharia, L. Omberg, J. Degenhardt, A. Reynolds, H. Ostrer, J. Mezey, and C. Bustamante. Hum. Biol., 84 (4): 343--364 (August 2012)
7 years ago by @peter.ralph
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admixture_tracts
admixture
methods
local_ancestry
PCA
admixture_tractsadmixturemethodslocal_ancestryPCA
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1Genome-wide patterns of population structure and admixture in West Africans and African Americans
K. Bryc, A. Auton, M. Nelson, J. Oksenberg, S. Hauser, S. Williams, A. Froment, J. Bodo, C. Wambebe, S. Tishkoff and 1 other author(s). Proc Natl Acad Sci U S A, 107 (2): 786-791 (January 2010)
12 years ago by @peter.ralph
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human_genome
admixture
population_structure
PCA
human_genomeadmixturepopulation_structurePCA
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1DIMENSION REDUCTION FOR SCRIPT CLASSIFICATION- PRINTED INDIAN DOCUMENTS
H. C, and C. K. International Journal of Advanced Information Technology (IJAIT), 7 (1/2/3): 1-12 (June 2017)
7 years ago by @ijaitislive
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SIFT
Neighbour
Nearest
PLS
SIR
PCA
GLCM
SIFTNeighbourNearestPLSSIRPCAGLCM
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1Robust statistics in data analysis -- A review: Basic concepts
M. Daszykowski, K. Kaczmarek, Y. Heyden, and B. Walczak. Chemometrics and Intelligent Laboratory Systems, 85 (2): 203 - 219 (2007)
15 years ago by @vivion
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projection-pursuit
robust
multivariate
pca
statistics
projection-pursuitrobustmultivariatepcastatistics
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1Robust SIMCA-bounding influence of outliers
M. Daszykowski, K. Kaczmarek, I. Stanimirova, Y. Heyden, and B. Walczak. Chemometrics and Intelligent Laboratory Systems, 87 (1): 95 - 103 (2007)Selected papers presented at the Conferentia Chemometrica 2005 Hajdúszoboszló, Hungary 28-31 August 2005 - Conferentia Chemometrica 2005.
15 years ago by @vivion
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simca
robust
outliers
pca
classification
simcarobustoutlierspcaclassification
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1An Application of Factor Analysis with Missing Data
C. de Ligny, G. Nieuwdorp, W. Brederode, W. Hammers, and J. van Houwelingen. Technometrics, 23 (1): pp. 91-95 (1981)
14 years ago by @vivion
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incomplete
missing
pca
factor
statistics
incompletemissingpcafactorstatistics
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1Dimension Reduction by Local Principal Component Analysis
N. Kambhatla, and T. Leen. Neural Computation, 9 (7): 1493-1516 (July 1997)
9 years ago by @peter.ralph
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methods
machine_learning
local_PCA
PCA
methodsmachine_learninglocal_PCAPCA
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1Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model
D. Mitomo, H. Nakamura, K. Ikeda, A. Yamagishi, and J. Higo. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 64 (4): 883-894 (September 2006)Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model (p 883-894) Daisuke Mitomo, Hironori K. Nakamura, Kazuyoshi Ikeda, Akihiko Yamagishi, Junichi Higo Published Online: Jun 28 2006 4:14PM DOI: 10.1002/prot.21069.
16 years ago by @huiyangsfsu
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domain
free-energy
barrier
charge
Phi-values
neutralization
analysis
PCA
SH3
atom
domainfree-energybarrierchargePhi-valuesneutralizationanalysisPCASH3atom
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2Reconstructing the Population Genetic History of the Caribbean
A. Moreno-Estrada, S. Gravel, F. Zakharia, J. McCauley, J. Byrnes, C. Gignoux, P. Ortiz-Tello, R. Martinez, D. Hedges, R. Morris and 11 other author(s). (2013)cite arxiv:1306.0558.
12 years ago by @peter.ralph
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population_genomics
human_genome
american_history
demographic_inference
IBD
PCA
population_genomicshuman_genomeamerican_historydemographic_inferenceIBDPCA
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1The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research
M. Nelson, K. Bryc, K. King, A. Indap, A. Boyko, J. Novembre, L. Briley, Y. Maruyama, D. Waterworth, G. Waeber and 13 other author(s). Am J Hum Genet, 83 (3): 347-358 (September 2008)
13 years ago by @peter.ralph
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data_source
POPRES
PCA
data_sourcePOPRESPCA
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1Bayesian principal component analysis
M. Nounou, B. Bakshi, P. Goel, and X. Shen. Journal of Chemometrics, 16 (11): 576--595 (2002)
11 years ago by @peter.ralph
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Bayesian
methods
PCA
BayesianmethodsPCA
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3Genes mirror geography within Europe
J. Novembre, T. Johnson, K. Bryc, Z. Kutalik, A. Boyko, A. Auton, A. Indap, K. King, S. Bergmann, M. Nelson and 2 other author(s). Nature, 456 (7218): 98-101 (November 2008)
15 years ago by @gcoop
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isolation_by_distance
PCA
isolation_by_distancePCA
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3Genes mirror geography within Europe
J. Novembre, T. Johnson, K. Bryc, Z. Kutalik, A. Boyko, A. Auton, A. Indap, K. King, S. Bergmann, M. Nelson and 2 other author(s). Nature, 456 (7218): 98-101 (November 2008)
15 years ago by @peter.ralph
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human_genome
gene_flow
PCA
spatial_structure
human_genomegene_flowPCAspatial_structure
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2On lines and planes of closest fit to points in space
K. Pearson. Philos. Mag, (1901)
10 years ago by @prlz77
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PCA
PCA
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2Measuring Program Similarity: Experiments with SPEC CPU Benchmark Suites
A. Phansalkar, A. Joshi, L. Eeckhout, and L. John. IEEE International Symposium on Performance Analysis of Systems and Software, 2005. ISPASS 2005., page 10--20. (March 2005)
9 years ago by @gron
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Set
Selection
KMeans
Benchmarking
Statistics
PCA
Suite
SetSelectionKMeansBenchmarkingStatisticsPCASuite
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1The impact of divergence time on the nature of population structure: an example from Iceland
A. Price, A. Helgason, S. Palsson, H. Stefansson, D. St Clair, O. Andreassen, D. Reich, A. Kong, and K. Stefansson. PLoS Genet, (June 2009)
13 years ago by @peter.ralph
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population_genomics
human_genome
population_structure
PCA
Iceland
population_genomicshuman_genomepopulation_structurePCAIceland
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1Representing teleconnection patterns over Europe: A comparison of SOM and PCA methods
Ε. Rousi, C. Anagnostopoulou, K. Tolika, and P. Maheras. Atmospheric Research, (January 2015)
7 years ago by @pbett
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circulation
nao
pca
teleconnections
circulationnaopcateleconnections
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3Nonlinear Component Analysis as a Kernel Eigenvalue Problem
B. Schölkopf, A. Smola, and K. Müller. Technical Report, 44. Max Planck Institute for Biological Cybernetics, Tübingen, Germany, (1996)
18 years ago by @sb3000
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clustering
kmeans
kernel
pca
clusteringkmeanskernelpca
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1The effect of genomic inversions on estimation of population genetic parameters from SNP data
N. Seich Al Basatena, C. Hoggart, L. Coin, and P. O'Reilly. Genetics, 193 (1): 243-253 (January 2013)
10 years ago by @peter.ralph
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simulation
inversions
PCA
simulationinversionsPCA
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1Analysis and Application of European Genetic Substructure Using 300K SNP Information
C. Tian, R. Plenge, M. Ransom, A. Lee, P. Villoslada, C. Selmi, L. Klareskog, A. Pulver, L. Qi, P. Gregersen and 1 other author(s). PLoS Genet, 4 (1): e4 (January 2008)
10 years ago by @peter.ralph
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inversions
PCA
spatial_structure
inversionsPCAspatial_structure
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