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Innovative Use of Ontologies: Association of Physiological Pathways to Corresponding Computational Models and Disparate Data Types.

, , , , , and . AMIA, AMIA, (2013)

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HeartCyc: A Cardiac Cycle Process Ontology Based in the Ontology of Physics for Biology., , , , and . ICBO, volume 833 of CEUR Workshop Proceedings, CEUR-WS.org, (2011)Open modeling and exchange (OMEX) metadata specification version 1.0., , , , and . J. Integr. Bioinform., (2020)Advances in Semantic Representation for Multiscale Biosimulation: A Case Study in Merging Models., , , and . Pacific Symposium on Biocomputing, page 304-315. (2009)Integration of Multi-Scale Biosimulation Models via Light-Weight Semantics., , , and . Pacific Symposium on Biocomputing, page 414-425. World Scientific, (2008)A Reappraisal of How to Build Modular, Reusable Models of Biological Systems., , , , , , , and . PLoS Comput. Biol., (2014)The Ontology of Physics for Biology - A Companion to Basic Formal Ontology., , and . ICBO, volume 2931 of CEUR Workshop Proceedings, page 1-9. CEUR-WS.org, (2019)Extending the Ontology of Physics for Biology with Thermodynamics., , and . ICBO, volume 2137 of CEUR Workshop Proceedings, CEUR-WS.org, (2017)An OWL knowledge base for classifying and querying collections of physiological models: A prototype human physiome., , and . ICBO, volume 1060 of CEUR Workshop Proceedings, page 16-21. CEUR-WS.org, (2013)Multiple ontologies in action: Composite annotations for biosimulation models., , , and . J. Biomed. Informatics, 44 (1): 146-154 (2011)Qualitative Causal Analyses of Biosimulation Models., , and . ICBO/BioCreative, volume 1747 of CEUR Workshop Proceedings, CEUR-WS.org, (2016)