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tRNAdb 2009: compilation of tRNA sequences and tRNA genes., , , , , and . Nucleic Acids Res., 37 (Database-Issue): 159-162 (2009)The RNAsnp web server: predicting SNP effects on local RNA secondary structure., , , , , and . Nucleic Acids Res., 41 (Webserver-Issue): 475-479 (2013)Partially Local Multi-way Alignments., and . Math. Comput. Sci., 12 (2): 207-234 (2018)Design of Artificial Riboswitches as Biosensors., , , , and . Sensors, 17 (9): 1990 (2017)RNA folding with hard and soft constraints., , and . Algorithms Mol. Biol., (2016)RNApuzzler: efficient outerplanar drawing of RNA-secondary structures., , , and . Bioinform., 35 (8): 1342-1349 (2019)Techniques for the Cograph Editing Problem: Module Merge is equivalent to Editing P4s., , , and . CoRR, (2015)Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs., , , and . BMC Bioinform., 24 (1): 235 (December 2023)Product Grammars for Alignment and Folding., , and . IEEE ACM Trans. Comput. Biol. Bioinform., 12 (3): 507-519 (2015)Bi-alignments with affine gaps costs., and . Algorithms Mol. Biol., 17 (1): 10 (2022)