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On the application of formal principles to life science data: a case study in the Gene Ontology, , and . Data Integration in the Life Sciences, page 79--94. Springer, (2004)The Blackwell Guide to the Philosophy of Computing and Information. chapter Ontology, page 155--166. Blackwell Publishing, (2004)The evaluation of ontologies, , , , and . Revolutionizing Knowledge Discovery in the Life Sciences, chapter 7, Springer, (2007)Relations in biomedical ontologies, , , , , , , , , and . Genome biology, 6 (5): 1 (2005)The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration, and . Nature Biotechnology, 25 (11): 1251-1255 (November 2007)Retrieval of Crystallographically-Derived Molecular Geometry Information, , , , , , , , , and 1 other author(s). J. Chem. Inf. Comput. Sci., 44 (6): 2133--2144 (Oct 13, 2004)A New Use of an Automated Reasoning Assistant: Open Questions in Equivalential Calculus and the Study of Infinite Domains., , , , and . Artif. Intell., 22 (3): 303-356 (1984)A scalable matrix-free spectral element approach for unsteady PDE constrained optimization using PETSc/TAO., , and . J. Comput. Sci., (2020)Ontology and Geographic Objects: An Empirical Study of Cognitive Categorization., , and . COSIT, volume 1661 of Lecture Notes in Computer Science, page 283-298. Springer, (1999)Layers: A New Approach to Locating Objects in Space., and . COSIT, volume 2825 of Lecture Notes in Computer Science, page 46-60. Springer, (2003)