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GOSemSim: an R package for measuring semantic similarity among GO terms and gene products., , , , , and . Bioinform., 26 (7): 976-978 (2010)Functional similarity analysis of human virus-encoded miRNAs., and . J. Clin. Bioinform., (2011)RIdeogram: drawing SVG graphics to visualize and map genome-wide data on the idiograms., , , , , , and . PeerJ PrePrints, (2019)TreeSummarizedExperiment: a S4 class for data with hierarchical structure., , , , , , and . F1000Research, (2020)Using meshes for MeSH term enrichment and semantic analyses.. Bioinform., 34 (21): 3766-3767 (2018)Robust expansion of phylogeny for fast-growing genome sequence data., , , , , , , , and . PLoS Comput. Biol., (February 2024)ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization., , and . Bioinform., 31 (14): 2382-2383 (2015)CBNplot: Bayesian network plots for enrichment analysis., , , and . Bioinform., 38 (10): 2959-2960 (2022)DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis., , , and . Bioinform., 31 (4): 608-609 (2015)RIdeogram: drawing SVG graphics to visualize and map genome-wide data on the idiograms., , , , , , and . PeerJ Comput. Sci., (2020)