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An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.

, and . WABI, volume 4645 of Lecture Notes in Computer Science, page 124-135. Springer, (2007)

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On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-binary Gene Trees., and . ISBRA, volume 9096 of Lecture Notes in Computer Science, page 187-198. Springer, (2015)Integrative analysis of 111 reference human epigenomes Open., , , , , , , , , and 86 other author(s). Nat., 518 (7539): 317-330 (2015)Phylogenetic uncertainty and transmission network inference: Lessons from phylogenetic reconciliation.. ICCABS, page 1. IEEE Computer Society, (2016)Locating Multiple Gene Duplications through Reconciled Trees., , , and . RECOMB, volume 4955 of Lecture Notes in Computer Science, page 273-284. Springer, (2008)Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss., , and . RECOMB, volume 7821 of Lecture Notes in Computer Science, page 1-13. Springer, (2013)The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches., and . ISBRA, volume 4983 of Lecture Notes in Computer Science, page 14-25. Springer, (2008)TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity., , , and . ISBRA, volume 12304 of Lecture Notes in Computer Science, page 203-216. Springer, (2020)TreeSolve: Rapid Error-Correction of Microbial Gene Trees., and . AlCoB, volume 12099 of Lecture Notes in Computer Science, page 125-139. Springer, (2020)Due to COVID-19 postponed to AlCoB 2021..Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial Genes and Domains., and . IEEE ACM Trans. Comput. Biol. Bioinform., 20 (6): 3511-3522 (November 2023)Reducing the Impact of Domain Rearrangement on Sequence Alignment and Phylogeny Reconstruction., and . ISBRA, volume 14248 of Lecture Notes in Computer Science, page 337-350. Springer, (2023)