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The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches.

, , , and . J. Comput. Biol., 29 (2): 155-168 (2022)

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Theoretical Analysis of Sequencing Bioinformatics Algorithms and Beyond.. Commun. ACM, 66 (7): 118-125 (July 2023)Genome Graphs.. University of Toronto, Canada, (2011)Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads., and . RECOMB, volume 4955 of Lecture Notes in Computer Science, page 50-64. Springer, (2008)Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers., , , , and . RECOMB, volume 6577 of Lecture Notes in Computer Science, page 238-251. Springer, (2011)Using state machines to model the Ion Torrent sequencing process and to improve read error rates., and . Bioinform., 29 (13): 344-351 (2013)Representation of k-mer Sets Using Spectrum-Preserving String Sets., and . RECOMB, volume 12074 of Lecture Notes in Computer Science, page 152-168. Springer, (2020)Complexity of independent set reconfigurability problems., , and . Theor. Comput. Sci., (2012)Applying the Safe-And-Complete Framework to Practical Genome Assembly., , , and . WABI, volume 312 of LIPIcs, page 8:1-8:16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2024)Data Structures to Represent a Set of k -long DNA Sequences, , and . ACM Computing Surveys, 54 (1): 1--22 (April 2021)Error correction of high-throughput sequencing datasets with non-uniform coverage., , , and . Bioinform., 27 (13): 137-141 (2011)