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Some practical aspects of free energy calculations from molecular dynamics simulation., and . J. Comput. Chem., 20 (8): 877-885 (1999)Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA., , , and . J. Comput. Chem., 32 (9): 1929-1943 (2011)How Thioredoxin Dissociates Its Mixed Disulfide., , , , , , and . PLoS Comput. Biol., (2009)Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields., , , and . J. Chem. Inf. Model., 54 (4): 1129-1142 (2014)Unbinding of retinoic acid from the retinoic acid receptor by random expulsion molecular dynamics., , and . Biophysical Journal, 91 (9): 3151--61 (2006)CHARMM: The biomolecular simulation program., , , , , , , , , and 25 other author(s). J. Comput. Chem., 30 (10): 1545-1614 (2009)Modeling pK Shift in DNA Triplexes Containing Locked Nucleic Acids., , , , and . J. Chem. Inf. Model., 58 (4): 773-783 (2018)A Highly Efficient Ab Initio Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method., , and . PARA, volume 4699 of Lecture Notes in Computer Science, page 100-108. Springer, (2006)The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid., , and . J. Comput. Chem., 38 (15): 1147-1157 (2017)Improved precision and efficiency of free energy calculations for small systems using lambda-scaled atomic masses and separating conformational and transformational sampling., and . J. Comput. Chem., 24 (12): 1383-1389 (2003)