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A sub-quadratic sequence alignment algorithm for unrestricted cost matrices.

, , and . SODA, page 679-688. ACM/SIAM, (2002)

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Two Algorithms for LCS Consecutive Suffix Alignment., , and . CPM, volume 3109 of Lecture Notes in Computer Science, page 173-193. Springer, (2004)Approximate Labelled Subtree Homeomorphism., , , and . CPM, volume 3109 of Lecture Notes in Computer Science, page 59-73. Springer, (2004)Alignment of metabolic pathways., , , and . Bioinform., 21 (16): 3401-3408 (2005)A High-Throughput Approach for Associating microRNAs with Their Activity Conditions., , , and . RECOMB, volume 3500 of Lecture Notes in Computer Science, page 133-151. Springer, (2005)Edit Distance with Duplications and Contractions Revisited., , , and . CPM, volume 6661 of Lecture Notes in Computer Science, page 441-454. Springer, (2011)On Almost Monge All Scores Matrices., , and . CPM, volume 54 of LIPIcs, page 17:1-17:12. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2016)SA-REPC - Sequence Alignment with Regular Expression Path Constraint., , and . LATA, volume 6031 of Lecture Notes in Computer Science, page 451-462. Springer, (2010)Regular Language Constrained Sequence Alignment Revisited., , and . J. Comput. Biol., 18 (5): 771-781 (2011)RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry., , , , and . BMC Bioinform., (2009)A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation., , and . WABI, volume 143 of LIPIcs, page 9:1-9:13. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2019)