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Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs., , , , and . BMC Bioinform., (2006)NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data., and . BMC Bioinform., (2013)HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development., , and . Nucleic Acids Res., 32 (Database-Issue): 86-90 (2004)Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares., , and . BIBE, page 296-297. IEEE Computer Society, (2010)DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genomes., , , , , and . ICLR, OpenReview.net, (2024)Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data., , and . BCB, page 278-285. ACM, (2015)Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier., , and . ICCABS, page 1-2. IEEE Computer Society, (2014)Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms., , , and . Briefings Bioinform., 18 (2): 260-269 (2017)DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models., , , , , , , and . CoRR, (2024)Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets., and . BCB, page 499-501. ACM, (2010)