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Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples.

, , , and . RECOMB-CG, volume 5817 of Lecture Notes in Computer Science, page 164-180. Springer, (2009)

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Maximum likelihood of evolutionary trees: hardness and approximation., and . ISMB (Supplement of Bioinformatics), page 97-106. (2005)A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance., , , and . ISBRA, volume 4463 of Lecture Notes in Computer Science, page 61-72. Springer, (2007)On three generalizations of contraction., , and . CDC, page 1539-1544. IEEE, (2014)Novel Driver Synonymous Mutations in the Coding Regions of GCB Lymphoma Patients Improve the Transcription Levels of BCL2., , and . ISMCO, volume 12508 of Lecture Notes in Computer Science, page 108-118. Springer, (2020)The extent of ribosome queuing in budding yeast., , , , , and . PLoS Comput. Biol., (2018)Discovering Local Patterns of Co-evolution., and . RECOMB-CG, volume 5267 of Lecture Notes in Computer Science, page 55-71. Springer, (2008)Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models., and . WABI, volume 5251 of Lecture Notes in Computer Science, page 354-368. Springer, (2008)Adding Hidden Nodes to Gene Networks (Extended Abstract)., and . WABI, volume 3240 of Lecture Notes in Computer Science, page 123-134. Springer, (2004)Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length., and . J. Comput. Biol., 14 (6): 817-838 (2007)Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans., , , , , , and . RECOMB-CG, volume 14616 of Lecture Notes in Computer Science, page 248-270. Springer, (2024)