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RNA Secondary Structure Prediction by Minimum Free Energy.. Encyclopedia of Algorithms, Springer, (2008)Pseudoknots in RNA secondary structures., and . RECOMB, page 201-209. ACM, (2000)RNA Secondary Structure Prediction Including Pseudoknots.. Encyclopedia of Algorithms, Springer, (2008)Complexity of Comparing Hidden Markov Models., and . ISAAC, volume 2223 of Lecture Notes in Computer Science, page 416-428. Springer, (2001)Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar., , and . WABI, volume 2149 of Lecture Notes in Computer Science, page 69-94. Springer, (2001)Solving the String Statistics Problem in Time O(n log n)., , , and . ICALP, volume 2380 of Lecture Notes in Computer Science, page 728-739. Springer, (2002)The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search., , and . Nucleic Acids Res., 33 (Web-Server-Issue): 650-653 (2005)Minimum Recombination Histories by Branch and Bound., , and . WABI, volume 3692 of Lecture Notes in Computer Science, page 239-250. Springer, (2005)Complexity of Pseudoknot Prediction in Simple Models.. ICALP, volume 3142 of Lecture Notes in Computer Science, page 919-931. Springer, (2004)Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony., , and . RECOMB, volume 4955 of Lecture Notes in Computer Science, page 463-477. Springer, (2008)