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Phylodynamics of Infectious Disease Epidemics, , , , and . Genetics, (2009)A new method for inferring timetrees from temporally sampled molecular sequences., , , , , , , and . PLoS Comput. Biol., (2020)TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity., , , , , , , and . Bioinform., 38 (10): 2719-2726 (2022)Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform., , , , , , and . ICCABS, page 1. IEEE Computer Society, (2012)Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics., , , , , , , and . PLoS Comput Biol, 3 (2): e29 (February 2007)Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics., , , , , , , and . PLoS Comput Biol, 3 (2): e29 (2007 Feb 16)Computational analysis of HIV-1 evolution and epidemiology.. BIBM Workshops, page 60-63. IEEE Computer Society, (2011)Datamonkey: rapid detection of selective pressure on individual sites of codon alignments., and . Bioinform., 21 (10): 2531-2533 (2005)Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses., , , , , and . PLoS Comput. Biol., (2006): Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial., , , , , , , , , and 24 other author(s). PLoS Comput. Biol., (2015)