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Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories

, , , and . The Journal of chemical physics, 139 (11): 09B642\_1 (2013)

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Toward a comprehensive language for biological systems. BMC Biology, 9 (1): 68+ (Oct 17, 2011)Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories., , , , , , and . PLoS Comput. Biol., (2016)Adaptive coarse-graining for transient and quasi-equilibrium analyses of stochastic gene regulation., , and . CDC, page 5361-5366. IEEE, (2012)Emulation of biological networks in reconfigurable hardware., , , , , and . BCB, page 536-540. ACM, (2011)Graphical rule-based representation of signal-transduction networks., , and . SAC, page 133-140. ACM, (2005)Regulatory network analysis acceleration with reconfigurable hardware., , , , , , and . EMBC, page 149-152. IEEE, (2011)Compartmental Rule-based Modeling of Biochemical Systems., , and . WSC, page 908-919. IEEE, (2009)Symbolic Model Checking of Signaling Pathways in Pancreatic Cancer., , , , and . BICoB, page 245-. ISCA, (2011)Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway., , , , , and . CMSB, volume 5307 of Lecture Notes in Computer Science, page 231-250. Springer, (2008)Dynamic behavior of cell signaling networks: model design and analysis automation., , and . DAC, page 8:1-8:6. ACM, (2013)