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Enzyme selectivity of HIV reverse transcriptase: conformations, ligands, and free energy partition, , и . The Journal of Physical Chemistry B, 119 (35): 11513--11526 (2015)The evolutionary capacity of protein structures., , , и . RECOMB, стр. 290-297. ACM, (2004)MOIL: A program for simulations of macromolecules, , , , , , , , и . Computer Physics Communications, 91 (1): 159 - 189 (1995)Exact milestoning, и . The Journal of chemical physics, 142 (9): 03B602\_1 (2015)Computer simulations of protein folding: Classical trajectories by optimization of action.. Comput. Phys. Commun., 169 (1-3): 277-283 (2005)Computing time scales from reaction coordinates by milestoning, и . The Journal of Chemical Physics, 120 (23): 10880-10889 (2004)Support Vector Training of Protein Alignment Models., , , и . RECOMB, том 4453 из Lecture Notes in Computer Science, стр. 253-267. Springer, (2007)Milestoning without a reaction coordinate, и . Journal of chemical theory and computation, 6 (6): 1805--1817 (2010)