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SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing.

, and . IEEE ACM Trans. Comput. Biol. Bioinform., 7 (4): 727-740 (2010)

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The impact of pseudorandom number quality on P-RnaPredict, a parallel genetic algorithm for RNA secondary structure prediction., , , and . GECCO, page 479-480. ACM, (2005)Improving the Portability and Performance of jViz.RNA - A Dynamic RNA Visualization Software., , and . PRIB, volume 7632 of Lecture Notes in Computer Science, page 82-93. Springer, (2012)RNA Structure as Permutation: A GA Approach Comparing Different Genetic Sequencing Operators., and . ISMIS, volume 2871 of Lecture Notes in Computer Science, page 511-520. Springer, (2003)Performance prediction for RNA design using parametric and non-parametric regression models., and . CIBCB, page 16-23. IEEE, (2009)Non-coding RNA gene finding with combined partial covariance models., and . CIBCB, page 306-313. IEEE, (2012)Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA folding., and . CIBCB, page 1-8. IEEE, (2010)SigTools: exploratory visualization for genomic signals., , and . Bioinform., 38 (4): 1126-1128 (2022)SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction, and . Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, page 466--475. (2006)Algorithms for RNA folding: a comparison of dynamic programming and parallel evolutionary algorithms., , and . Congress on Evolutionary Computation, page 475-483. IEEE, (2005)Significance of randomness in P-RnaPredict - a parallel evolutionary algorithm for RNA folding., , , and . Congress on Evolutionary Computation, page 467-474. IEEE, (2005)