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CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters.

, , , , , and . IEEE Trans. Parallel Distributed Syst., 27 (10): 2838-2850 (2016)

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Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU., and . IEEE Trans. Parallel Distributed Syst., 24 (5): 1009-1021 (2013)Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space., and . IPDPS, page 1199-1211. IEEE, (2011)Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification., , and . ACM Comput. Surv., 48 (4): 63:1-63:36 (2016)An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison., , and . Expert Syst. Appl., 41 (10): 4929-4938 (2014)Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning., , , , and . IEEE Trans. Parallel Distributed Syst., 32 (12): 3053-3065 (2021)MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning., , , , , and . ACM Trans. Parallel Comput., 2 (4): 28:1-28:31 (2016)CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters., , , , , and . IEEE Trans. Parallel Distributed Syst., 27 (10): 2838-2850 (2016)Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis., , , and . IWBBIO (2), volume 10209 of Lecture Notes in Computer Science, page 512-523. (2017)Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms., , , , , and . Comput. J., 61 (5): 687-713 (2018)Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm., , , and . ICNC, page 247-253. IEEE Computer Society, (2012)