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Comparison of three enveloping distribution sampling Hamiltonians for the estimation of multiple free energy differences from a single simulation., and . J. Comput. Chem., 30 (11): 1664-1679 (2009)Calculation of binding free energies of inhibitors to plasmepsin II., , , , and . J. Comput. Chem., 32 (9): 1801-1812 (2011)Algorithms for Clustering Molecular Dynamics Confogurations., and . J. Comput. Chem., 15 (12): 1331-1340 (1994)Reversible peptide folding: Dependence on molecular force field used., and . J. Comput. Chem., 21 (9): 774-787 (2000)Decomposition of the Free Energy of a System in Terms of Specific Interactions: Implications for Theoretical and Experimental Studies, and . Journal of Molecular Biology, 240 (2): 167 - 176 (1994)Directed evolution of a model primordial enzyme provides insights into the development of the genetic code, , , , , , , and . PLoS Genet., (2013)Local elevation: A method for improving the searching properties of molecular dynamics simulation., , and . J. Comput. Aided Mol. Des., 8 (6): 695-708 (1994)Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry., and . J. Comput. Aided Mol. Des., 1 (2): 171-176 (1987)Comparison of four methods to compute the dielectric permittivity of liquids from molecular dynamics simulations, , and . J. Chem. Phys., 115 (3): 1125--1136 (2001)Achieving Super Computer Performance with a DSP Array Processor., , , , , , , , and . SC, page 543-550. IEEE Computer Society, (1992)