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Metabolic network-based interpretation of gene expression data elucidates human cellular metabolism.. Biotechnology & genetic engineering reviews, (2010)iMAT: an integrative metabolic analysis tool, , and . Bioinformatics, 26 (24): 3140--3142 (Dec 15, 2010)Regulatory on/off minimization of metabolic flux changes after genetic perturbations, , and . Proc. Natl. Acad. Sci. USA, 102 (21): 7695--7700 (May 24, 2005)Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity, , , , , and . Proceedings of the National Academy of Sciences, 109 (1): 339--344 (Jan 3, 2012)Computational design of auxotrophy-dependent microbial biosensors for combinatorial metabolic engineering experiments, and . PLoS One, (2011)Comparison of Protein-Protein Interaction Confidence Assignment Schemes., , , , and . Systems Biology and Regulatory Genomics, volume 4023 of Lecture Notes in Computer Science, page 39-50. Springer, (2005)Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect, , , , and . PLOS Computational Biology, 7 (3): e1002018+ (Mar 10, 2011)SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments., , , , and . ISMB/ECCB (Supplement of Bioinformatics), page 359-366. (2007)Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements, , , , , , , , , and . Proc. Natl. Acad. Sci. U. S. A., 113 (12): 3401--3406 (2016)MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks, and . Genome Biology, 13 (11): R111+ (Nov 29, 2012)