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A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure.

, , , and . BIOINFORMATICS, page 34-41. SciTePress, (2012)

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Motif discovery and motif finding from genome-mapped DNase footprint data., , and . Bioinform., 25 (18): 2318-2325 (2009)A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure., , , and . BIOINFORMATICS, page 34-41. SciTePress, (2012)Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition., , , , and . JOBIM, volume 2066 of Lecture Notes in Computer Science, page 57-73. Springer, (2000)ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs., , , , , , , , , and 3 other author(s). Nucleic Acids Res., 50 (W1): 51-56 (2022)Three Variations on Word Counting., , and . German Conference on Bioinformatics, page 75-82. Logos Verlag, (2000)Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices., , , , and . BIOINFORMATICS, page 146-150. SciTePress, (2013)PERFECTOS-APE - Predicting Regulatory Functional Effect of SNPs by Approximate P-value Estimation., , , , and . BIOINFORMATICS, page 102-108. SciTePress, (2015)From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites., , , , , and . J. Bioinform. Comput. Biol., (2013)A promoter-level mammalian expression atlas., , , , , , , , , and 254 other author(s). Nat., 507 (7493): 462-470 (2014)Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules., , , , and . Algorithms Mol. Biol., (2007)