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DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility.

, , , , and . Genom. Proteom. Bioinform., 20 (3): 496-507 (2022)

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An Overview of Bioinformatics Challenges for Human Cell Atlas.. BIBM, page 4. IEEE Computer Society, (2018)Pattern Recognition in Mining High-Throughput Genomics/Proteomics Data: The New Challenges in Old Questions.. ICCTA, page 242-244. IEEE Computer Society, (2007)A case study on the detailed reproducibility of a Human Cell Atlas project., and . Quant. Biol., 7 (2): 162-169 (2019)ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data., , , , , , , , and . Briefings Bioinform., (2022)SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data., , , and . BMC Bioinform., 21 (1): 184 (2020)QueST: Querying Functional and Structural Niches on Spatial Transcriptomics Data via Contrastive Subgraph Embedding., , , and . CoRR, (2024)Molecular Graph Representation Learning Integrating Large Language Models with Domain-specific Small Models., , , , and . BIBM, page 2928-2935. IEEE, (2024)The RTOC Open System for Controlling Fictitious Roaming Platform., , , , and . ROBIO, page 34-39. IEEE, (2004)Building digital life systems for future biology and medicine., , , , , , and . Quant. Biol., 11 (3): 207-213 (September 2023)Special collection of recent advances in next-generation bioinformatics.. Quant. Biol., 4 (1): 20-21 (2016)