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Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST., , , and . Bioinform., 33 (12): 1798-1805 (2017)Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework., , , , , , , , and . IWBBIO, page 555-556. Copicentro Editorial, (2013)Bayesian Phylogeography Finds Its Roots, , , and . PLoS Computational Biology, 5 (9): e1000520 (2009)Lorenzo-Redondo et al. reply., , , , , , , , , and 6 other author(s). Nat., 551 (7681): E10-E10 (2017)GENIE: estimating demographic history from molecular phylogenies., and . Bioinform., 18 (10): 1404-1405 (2002)Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences., , and . Mol Biol Evol, 23 (1): 7--9 (January 2006)Evolutionary analysis of the dynamics of viral infectious disease., and . Nature reviews. Genetics, 10 (8): 540--550 (August 2009)Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution., , , , , and . Mol Biol Evol, 24 (3): 845-852 (March 2007)The molecular population genetics of HIV-1 group O., , , , , , , and . Genetics, 167 (3): 1059--1068 (2004 Jul)Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees, and . Comput. Appl. Biosci., 13 (3): 235--238 (June 1997)