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TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.

, , , and . Nucleic Acids Res., 33 (Database-Issue): 103-107 (2005)

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Computational Modeling of Mammalian Promoters - (Invited Keynote Talk).. ISBRA, volume 7292 of Lecture Notes in Computer Science, page 330. Springer, (2012)DE MERVLs are Enriched Around Two-Cell-Specific Genes During Zygotic Genome Activation in Mouse., , , and . SMC, page 3399-3404. IEEE, (2018)A method for finding novel associations between genome-wide copy number and dna methylation patterns., , , , , and . GENSiPS, page 78-82. IEEE, (2011)ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks., , , , , , , and . Nucleic Acids Res., 43 (Webserver-Issue): W264-W269 (2015)MICC: an R package for identifying chromatin interactions from ChIA-PET data., , and . Bioinform., 31 (23): 3832-3834 (2015)Gene set-based module discovery in the breast cancer transcriptome., , , , , and . BMC Bioinformatics, (2009)2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome., , , , , and . BMC Bioinform., 21 (1): 159 (2020)Advances in computational ChIA-PET data analysis., , , , , and . Quant. Biol., 4 (3): 217-225 (2016)Combinatorial patterns of histone acetylations and methylations in the human genome., , , , , , , , , and 1 other author(s). Nat. Genet., 40 (7): 897-903 (2008)Using quality scores and longer reads improves accuracy of Solexa read mapping., , and . BMC Bioinform., (2008)