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Chapter 2: Data-Driven View of Disease Biology, and . PLoS Comput Biol, 8 (12): e1002816+ (Dec 27, 2012)Unsupervised Machine Learning to Support Functional Characterization of Genes: Emphasis on Cluster Description and Class Discovery.. Data Analysis and Visualization in Genomics and Proteomics, Wiley, (2005)Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity., , , , and . Bioinform., 18 (5): 679-688 (2002)Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations., , , and . Bioinform., 36 (4): 994-999 (2020)Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana., , , , and . BMC Syst. Biol., (2010)Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction., and . ICML, volume 32 of JMLR Workshop and Conference Proceedings, page 745-753. JMLR.org, (2014)Functional Analysis of Gene Duplications in Saccharomyces cerevisiae, , and . Genetics, 175 (2): 933--943 (Feb 1, 2007)The Sleipnir library for computational functional genomics., , , and . Bioinform., 24 (13): 1559-1561 (2008)Dynamic Scalable Visualization for Collaborative Scientific Applications., , , and . IPDPS, IEEE Computer Society, (2005)Assessing the functional structure of genomic data., and . ISMB, page 330-338. (2008)