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The SCJ Small Parsimony Problem for Weighted Gene Adjacencies., , , , , and . IEEE ACM Trans. Comput. Biol. Bioinform., 16 (4): 1364-1373 (2019)PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning., , , , and . Bioinform., 39 (Supplement-1): 288-296 (2023)Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes., , , , and . BMC Genom., (2018)Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples., , , , , and . CoRR, (2015)Small parsimony for natural genomes in the DCJ-indel model., and . J. Bioinform. Comput. Biol., 19 (6): 2140009:1-2140009:15 (2021)Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples., , , and . RECOMB, volume 9029 of Lecture Notes in Computer Science, page 256-258. Springer, (2015)The distance and median problems in the single-cut-or-join model with single-gene duplications., , , and . Algorithms Mol. Biol., 15 (1): 8 (2020)Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework., , , and . BMC Bioinform., 20-S (20): 637 (2019)Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach., , and . BMC Bioinform., 16 (S19): S6 (December 2015)A Graph-Theoretic Barcode Ordering Model for Linked-Reads., , , , , and . WABI, volume 172 of LIPIcs, page 11:1-11:17. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, (2020)